interface graph thumbnail
legend  pdf

structure nameDNA BINDING DOMAIN OF RESTRICTION ENDONUCLEASE MCRBC IN COMPLEX WITH N4-METHYLCYTOSINE DNA
(5-methylcytosine-specific restriction enzyme B)
reference'FEBS 592 3335 2018 X-RAY DIFFRACTION
sourceEscherichia coli
experimentX-ray (resolution=1.55, R-factor=0.139)
multimeric complexes3ssc_AB 3ssd_AB 3sse_AB 6gcd_AB 6gce_AB 6gcf_AB 8ijo_AB 8ijp_AB 8ik4_AB 8ik8_AB 8ikd_AB
redundant complexes3ssc_B 3ssd_B 3sse_A 6gcd_B 6gce_B 8ijo_B 8ijp_B 8ik4_A 8ik8_B 8ikd_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureQYNWAYSDTY

Estimated binding specificities ?

contactlogo
# IC=4.304 IC/col=1.076 n_of_columns=4 specificity:   
A |  12   0   0   0
C |  12   0   0  96
G |  60  96   0   0
T |  12   0  96   0
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: McrBC
CCGGTPubMed6gcf_B(1.38e-04), 3ssd_AB(3.54e-04), 3sse_AB(1.19e-07), ... (total=8)

home
updated Sun Aug 3 11:26:04 2025