6gyl_MOQRUW : 3D-footprint complex

structure name	STRUCTURE OF A YEAST CLOSED COMPLEX WITH DISTORTED DNA (CORE CCDIST)
experiment	NMR
structural superfamily	Cyclin-like;Zinc beta-ribbon;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;
reference complex	5oqj_M 5oqj_Q 5oqj_R 5oqj_W 6gyk_U
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6gyl_M interface= pnlnivltcpeckvyppkiverfsegdvvcalcglvlsdklvdtrsewrtfnplldgnnlstrigkgettdmrftkelnkaqgknvmdkkdnevqaafakitmlcdaaelpkivkdcakeayklchdektlkgksmesimaasiligcrraevartfkeiqslihvktkefgktlnimknilrgksqnltyiprfcshlglpmqvttsaeytakkckeikeiagkspitiavvsiylnillfqipitaakvgqtlqvtegtiksgykilyehrdklvdp > 6gyl_O interface=9,11,39,54,56,62,64,99,101,131,145,153,155, sgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelfPgliyrmvkpkivlLifvsgkiVlTgakqreeiyqafeaiypvlsefrkm > 6gyl_Q interface= fikrdrmrRnFlrmreynefplraipkedlenmrthllKfqskkkinpvtdfhLpVrlhrkRkTrqlkvldenakklrfeefypwvmedfyntwvgsyEaGnsdsyvllsveddgsftmipadkvykftaRnkyatltideaekRmdk > 6gyl_R interface= dldlersnRqVwlvrlpmflaekwrlgkirinkskitlLlnepheydleltkkVvEneyvfTeQtipkktaivgtvchecqvmpyhkiveqrrnivklNnKerittldetvgvtmshtgmsmrsdnsnflKvmpkkeildylfkLfdeydywSlKglkertrqpeahlkecldkvatlvkkgpyafkytl > 6gyl_U interface= snaeasrvYeIivesvvnevredfenagideqtlqdlkNiwqkkltenlmlclYdKvtrtkArWkcslkdgvvtinrndytfqkaqveaewv > 6gyl_W interface= piddivknLlKfvvrgfyggsfvlvldailfhsvlaedDlkqllsinktelgpLiArlrsdRlIsihkqreyppnsksvervyyyvkyphaidaikwkVhQvvqrlkddldknsepngymcpicltkytqLeavqllnfdrtefLcslcdepLvEddsgkknkekqdklnrlmdqiqpiidslkkiddsri
interface signature	/NVFLFVTNVPLVT/RFKLVRTEGRR/RVLVETQNKKLSK/YINYKAW/LKDLARIVQLLLE

Estimated binding specificities ?

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# IC=3.022 IC/col=0.755 n_of_columns=4

specificity:

A |  96  96  12  38
C |   0   0  12  19
G |   0   0  12  19
T |   0   0  60  20

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updated Sat Dec 14 12:50:40 2024