6jgw_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR CADR FROM P. PUTIDA IN COMPLEX WITH DNA
reference	Liu et al. Proc.Natl.Acad.Sci.USA 116 20398 2019
source	PSEUDOMONAS PUTIDA
experiment	X-ray (resolution=2.80, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jgw_A interface=15,18,19,36, mkigelakatdcavEtiRYyereqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddsgsvnalidehiehvqaridglvalqeqlvelrrrcnaqgaecailqqle > 6jgw_B interface=15,18,19,22,36, mkigelakatdcavEtiRYyeReqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddsgsvnalidehiehvqaridglvalqeqlvelrrrcnaqga
interface signature	ERYY/ERYRY

Estimated binding specificities ?

readout + contact

# IC=9.454 IC/col=0.498 n_of_columns=19

specificity:

A |   5  24  24   2  24   2  24   0   2  24  11   0  12  24  24  87  24  24   5
C |  87  24  24   2  24   2  24   0   2  24   8  96  11  24  24   2  24  24   2
G |   2  24  24   5  24   2  24  96   2  24  70   0  11  24  24   2  24  24  87
T |   2  24  24  87  24  90  24   0  90  24   7   0  62  24  24   5  24  24   2

scan!

home
updated Sat Dec 14 13:46:55 2024