6jgw_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR CADR FROM P. PUTIDA IN COMPLEX WITH DNA
reference	Liu et al. Proc.Natl.Acad.Sci.USA 116 20398 2019
source	PSEUDOMONAS PUTIDA
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Putative DNA-binding domain;
reference complex	6jgx_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jgw_A interface=15,18,19,36, mkigelakatdcavEtiRYyereqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddsgsvnalidehiehvqaridglvalqeqlvelrrrcnaqgaecailqqle > 6jgw_B interface=15,18,19,22,36, mkigelakatdcavEtiRYyeReqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddsgsvnalidehiehvqaridglvalqeqlvelrrrcnaqga
interface signature	ERYY/ERYRY

Estimated binding specificities ?

readout + contact

# IC=9.356 IC/col=0.492 n_of_columns=19

specificity:

A |   2  24  24   4  24  24  61   0   2  24  74   0  24  88  24  90  24  24   2
C |  88  24  24   2  24  24  13   0  77  24   5  96  24   4  24   2  24  24   4
G |   2  24  24   2  24  24  12  96   4  24  15   0  24   2  24   2  24  24  88
T |   4  24  24  88  24  24  10   0  13  24   2   0  24   2  24   2  24  24   2

scan!

home
updated Tue Jan 6 05:34:01 2026