6jgw_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR CADR FROM P. PUTIDA IN COMPLEX WITH DNA
reference	Liu et al. Proc.Natl.Acad.Sci.USA 116 20398 2019
source	PSEUDOMONAS PUTIDA
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Putative DNA-binding domain;
reference complex	6jgx_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jgw_A interface=15,18,19,36, mkigelakatdcavEtiRYyereqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddsgsvnalidehiehvqaridglvalqeqlvelrrrcnaqgaecailqqle > 6jgw_B interface=15,18,19,22,36, mkigelakatdcavEtiRYyeReqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddsgsvnalidehiehvqaridglvalqeqlvelrrrcnaqga
interface signature	ERYY/ERYRY

Estimated binding specificities ?

readout + contact

# IC=9.484 IC/col=0.499 n_of_columns=19

specificity:

A |   0  24  24   3  24   3  24   0   1  24  11   0   3  24  24  88  24  24   3
C |  88  24  24   6  24   3  24   0   3  24   5  96  17  24  24   3  24  24   3
G |   3  24  24   3  24   3  24  96   0  24  69   0  15  24  24   2  24  24  88
T |   5  24  24  84  24  87  24   0  92  24  11   0  61  24  24   3  24  24   2

scan!

home
updated Wed Jul 30 19:14:24 2025