6jgw_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR CADR FROM P. PUTIDA IN COMPLEX WITH DNA
reference	Liu et al. Proc.Natl.Acad.Sci.USA 116 20398 2019
source	PSEUDOMONAS PUTIDA
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Putative DNA-binding domain;
reference complex	6jgx_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jgw_A interface=15,18,19,36, mkigelakatdcavEtiRYyereqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddsgsvnalidehiehvqaridglvalqeqlvelrrrcnaqgaecailqqle > 6jgw_B interface=15,18,19,22,36, mkigelakatdcavEtiRYyeReqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddsgsvnalidehiehvqaridglvalqeqlvelrrrcnaqga
interface signature	ERYY/ERYRY

Estimated binding specificities ?

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# IC=9.793 IC/col=0.515 n_of_columns=19

specificity:

A |   0  24  24   1  24  24  43   0   0  24  65   0  24  84  24  93  24  24   0
C |  92  24  24   0  24  24  15   0  77  24   3  96  24   6  24   0  24  24   0
G |   0  24  24   3  24  24  19  96   0  24  19   0  24   3  24   0  24  24  96
T |   4  24  24  92  24  24  19   0  19  24   9   0  24   3  24   3  24  24   0

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updated Tue Sep 10 14:37:13 2024