6jgx_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR CADR FROM P. PUTIDA IN COMPLEX WITH CADMIUM(II) AND DNA (CADR)
reference	Liu et al. Proc.Natl.Acad.Sci.USA 116 20398 2019
source	PSEUDOMONAS PUTIDA
experiment	X-ray (resolution=2.71, R-factor=0.211)
structural superfamily	Putative DNA-binding domain;
sequence family	MerR, DNA binding; MerR family regulatory protein;
multimeric complexes	6jgw_AB 6jgx_AB 6jni_CD 6jni_EF 6jyw_AB
redundant complexes	6jgw_B 6jni_E 6jyw_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jgx_B interface=15,18,19,22,36, mkigelakatdcavEtiRYyeReqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddscgsvnalidehiehvqaridglvalqeqlvelrrrcnaqgaecailqqletngavsvpet
interface signature	ERYRY

Estimated binding specificities ?

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# IC=4.575 IC/col=0.508 n_of_columns=9

specificity:

A |  18  24  18   0  24  18  24   0   0
C |  66  24  39   0  24  20  24   0   0
G |   3  24  18   0  24  21  24  96   0
T |   9  24  21  96  24  37  24   0  96

scan!

Dendrogram of similar interfaces ?

matrix format

  
  EARTYARTYG   L                 +-----6jgx_B    
                   +-------------3 
  RGHTHC--YG   L   !             +-----1r8d_B    
                   ! 
  RGRTYT--RT   L --5                   +4r4e_B    
                   !         +---------1 
  RART------       !         !         +4r24_B    
                   +---------4 
  RGRTYT--KT   L             !        +7tea_B    
                             +--------2 
  RCRT------                          +7tec_A

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updated Fri Sep 13 22:11:03 2024