6jgx_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR CADR FROM P. PUTIDA IN COMPLEX WITH CADMIUM(II) AND DNA
reference	Liu et al. Proc.Natl.Acad.Sci.USA 116 20398 2019
source	PSEUDOMONAS PUTIDA
experiment	X-ray (resolution=2.71, R-factor=?)
structural superfamily	Putative DNA-binding domain;
reference complex	6jgx_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jgx_A interface=15,18,19,36, mkigelakatdcavEtiRYyereqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddscgsvnalidehiehvqaridglvalqeqlvelrrrcnaqgaecailqqletngavsvpetshvgrsh > 6jgx_B interface=15,18,19,22,36, mkigelakatdcavEtiRYyeReqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddscgsvnalidehiehvqaridglvalqeqlvelrrrcnaqgaecailqqletngavsvpet
interface signature	ERYY/ERYRY

Estimated binding specificities ?

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# IC=10.431 IC/col=0.549 n_of_columns=19

specificity:

A |  13  24  11   2  24  24  24   0   0  24  93   0  24  62  24  87   8  24   0
C |  81  24  66   5  24  24  24   0  96  24   0  96  24  15  24   2   8  24   2
G |   0  24  11   2  24  24  24  96   0  24   0   0  24  11  24   2  67  24  94
T |   2  24   8  87  24  24  24   0   0  24   3   0  24   8  24   5  13  24   0

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updated Tue Sep 10 14:37:29 2024