6jni_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR CADR FROM P. PUTIDA IN COMPLEX WITH ZINC(II) AND DNA
reference	Liu et al. Proc.Natl.Acad.Sci.USA 116 20398 2019
source	PSEUDOMONAS PUTIDA
experiment	X-ray (resolution=2.90, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jni_C interface=15,18,19,36, mkigelakatdcavEtiRYyereqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddscgsvnalidehiehvqaridglvalqeqlvelrrrccailqqletngavsvp > 6jni_D interface=15,18,19,22,36, mkigelakatdcavEtiRYyeReqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddscgsvnalidehiehvqaridglvalqeqlvelrrrcnaqgaecailqqletngavsvpetehshvgrsh
interface signature	ERYY/ERYRY

Estimated binding specificities ?

readout + contact

# IC=16.114 IC/col=0.806 n_of_columns=20

specificity:

A |   3  24  24   3   3   0  96   0   6  24  87   0   0  96   3  87  24  24   3   3
C |  87  24  24   3   3   0   0   0  75  24   3  96   0   0   3   3  24  24   3   3
G |   3  24  24   3  87   0   0  96   9  24   3   0   0   0   3   3  24  24  87   6
T |   3  24  24  87   3  96   0   0   6  24   3   0  96   0  87   3  24  24   3  84

scan!

home
updated Sat Dec 14 13:53:30 2024