6jni_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR CADR FROM P. PUTIDA IN COMPLEX WITH ZINC(II) AND DNA
reference	Liu et al. Proc.Natl.Acad.Sci.USA 116 20398 2019
source	PSEUDOMONAS PUTIDA
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Putative DNA-binding domain;
reference complex	6jgx_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jni_E interface=15,18,19,22,36, mkigelakatdcavEtiRYyeReqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspcgsvnalidehiehvqaridglvalqeqlvelrrrcnaqgaecailqqletngavshshvgrsh > 6jni_F interface=15,18,19,36, mkigelakatdcavEtiRYyereqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddscgsvnalidehiehvqaridglvalqeqlvelrrrccailqqletngavsvp
interface signature	ERYRY/ERYY

Estimated binding specificities ?

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# IC=15.904 IC/col=0.795 n_of_columns=20

specificity:

A |  83   3  24  24   3  86   0  96   0   0  24   3   3   0  96   3  86  24  24   3
C |   6  86  24  24   4   3   0   0   0   4  24   3  87   0   0  86   3  24  24   3
G |   3   3  24  24   3   3   0   0  96   3  24  86   3   0   0   3   4  24  24  86
T |   4   4  24  24  86   4  96   0   0  89  24   4   3  96   0   4   3  24  24   4

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updated Tue Sep 10 14:43:33 2024