6jni_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR CADR FROM P. PUTIDA IN COMPLEX WITH ZINC(II) AND DNA
reference	Liu et al. Proc.Natl.Acad.Sci.USA 116 20398 2019
source	PSEUDOMONAS PUTIDA
experiment	X-ray (resolution=2.90, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jni_E interface=15,18,19,22,36, mkigelakatdcavEtiRYyeReqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspcgsvnalidehiehvqaridglvalqeqlvelrrrcnaqgaecailqqletngavshshvgrsh > 6jni_F interface=15,18,19,36, mkigelakatdcavEtiRYyereqllpeparsdgnYrlytqahverltfirncrtldmtldeirsllrlrdspddscgsvnalidehiehvqaridglvalqeqlvelrrrccailqqletngavsvp
interface signature	ERYRY/ERYY

Estimated binding specificities ?

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# IC=15.969 IC/col=0.798 n_of_columns=20

specificity:

A |  83   3  24  24   3  87   0  96   0   3  24   3   4   0  96   3  86  24  24   3
C |   6  87  24  24   4   3   0   0   0   4  24   4  86   0   0  86   3  24  24   3
G |   4   3  24  24   3   3   0   0  96   0  24  86   3   0   0   4   4  24  24  87
T |   3   3  24  24  86   3  96   0   0  89  24   3   3  96   0   3   3  24  24   3

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updated Sat Dec 14 13:53:44 2024