6jpi_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PA4674 IN COMPLEX WITH ITS OPERATOR DNA (28BP) FROM PSEUDOMONAS AERUGINOSA
reference	Zhang et al. 'To ? ? ?
experiment	X-ray (resolution=3.14, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	7csw_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jpi_A interface=23,32,33,34,37,44, mrpihpgeilrdeflmefdispAalaralkvSAPtvNdivreqRgisadmairlgryfdtsaqfwmnlqseyslatayaangkqieheiepl > 6jpi_B interface=23,32,33,34,37,44, mrpihpgeilrdeflmefdispAalaralkvSAPtvNdivreqRgisadmairlgryfdtsaqfwmnlqseyslatayaangkqieheiepll > 6jpi_C interface=22,31,32,33,36,43, rpihpgeilrdeflmefdispAalaralkvSAPtvNdivreqRgisadmairlgryfdtsaqfwmnlqseyslatayaangkqieheiepl > 6jpi_D interface=23,32,33,34,37,41,44, mrpihpgeilrdeflmefdispAalaralkvSAPtvNdivReqRgisadmairlgryfdtsaqfwmnlqseyslatayaangkqieheiepll
interface signature	ASAPNR/ASAPNR/ASAPNR/ASAPNRR

Estimated binding specificities ?

contact

# IC=18.731 IC/col=0.851 n_of_columns=22

specificity:

A |   0  78  94   5   1  24   7   0  24  96   0   0   0   5  96  24  24   0   5   1  11  93
C |   0   5   1  76  90  24  11   0  24   0  96   0   0  12   0  24  24  96   8   1   7   1
G |   0   8   0   7   4  24   9   0  24   0   0  96   0   5   0  24  24   0  76   4   9   1
T |  96   5   1   8   1  24  69  96  24   0   0   0  96  74   0  24  24   0   7  90  69   1

scan!

home
updated Tue Sep 10 14:51:04 2024