6jw3_B : 3D-footprint complex

structure name	DEGENERATE RVD RG FORMS A DISTINCT LOOP CONFORMATION (TAL effector)
reference	Liu et al. J.Mol.Biol. 432 1035 2020
source	Xanthomonas campestris pv. armoraciae
experiment	X-ray (resolution=3.10, R-factor=0.244)
structural superfamily	Thiolase-like;
sequence family	Xanthomonas avirulence protein, Avr/PthA;
reference complex	4osh_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jw3_B interface=37,72,106,140,276,310,344,412, mqwsgaralealltvagelrgpplqldtgqllkiakRggvtaveavhawrnaltgaplnltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiashDggkqaletvqrllpvlcqahgltpeqvvaiashDggkqaletvqallpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasrgggkqaletvqrllpvlcqahgltpqqvvaiasnNggkqaletvqrllpvlcqahgltpqqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiasnNggkqaletvqrllpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalaclggrpaldavkklehhhh
interface signature	RDDDNDND

Estimated binding specificities ?

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# IC=8.316 IC/col=0.640 n_of_columns=13

specificity:

A |   0  24   0   0   5  24  24  24   0   0   5  55   5
C |   0  24  74   0  69  24  24  24   0   0   1  21  65
G |  96  24   6  96   5  24  24  24  96  96  90  10  16
T |   0  24  16   0  17  24  24  24   0   0   0  10  10

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updated Fri Jan 9 07:06:35 2026