6jw3_B : 3D-footprint complex

structure name	DEGENERATE RVD RG FORMS A DISTINCT LOOP CONFORMATION (TAL effector)
reference	Liu et al. J.Mol.Biol. 432 1035 2020
source	Xanthomonas campestris pv. armoraciae
experiment	X-ray (resolution=3.10, R-factor=0.244)
structural superfamily	Thiolase-like;
sequence family	Xanthomonas avirulence protein, Avr/PthA;
reference complex	6lew_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jw3_B interface=37,72,106,140,276,310,344,412, mqwsgaralealltvagelrgpplqldtgqllkiakRggvtaveavhawrnaltgaplnltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiashDggkqaletvqrllpvlcqahgltpeqvvaiashDggkqaletvqallpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasrgggkqaletvqrllpvlcqahgltpqqvvaiasnNggkqaletvqrllpvlcqahgltpqqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiasnNggkqaletvqrllpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalaclggrpaldavkklehhhh
interface signature	RDDDNDND

Estimated binding specificities ?

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# IC=8.414 IC/col=0.647 n_of_columns=13

specificity:

A |   0  24   0   0   5  24  24  24   0   0   5  52   5
C |   0  24  79   0  67  24  24  24   0   0   0  22  62
G |  96  24   0  96   8  24  24  24  96  96  91  11  18
T |   0  24  17   0  16  24  24  24   0   0   0  11  11

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updated Tue Dec 17 04:40:17 2024