6jw4_E : 3D-footprint complex

structure name	DEGENERATE RVD RG FORMS A DISTINCT LOOP CONFORMATION (TAL effector)
reference	Liu et al. J.Mol.Biol. 432 1035 2020
source	Xanthomonas campestris pv. armoraciae
experiment	X-ray (resolution=3.09, R-factor=0.245)
structural superfamily	Thiolase-like;
sequence family	Xanthomonas avirulence protein, Avr/PthA;
reference complex	6lew_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jw4_E interface=37,72,106,140,276,310,344,412, mqwsgaralealltvagelrgpplqldtgqllkiakRggvtaveavhawrnaltgaplnltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiashDggkqaletvqrllpvlcqahgltpeqvvaiashDggkqaletvqallpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasrgggkqaletvqrllpvlcqahgltpqqvvaiasnNggkqaletvqrllpvlcqahgltpqqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiasnNggkqaletvqrllpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalaclggrpaldavkkl
interface signature	RDDDNDND

Estimated binding specificities ?

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# IC=8.981 IC/col=0.816 n_of_columns=11

specificity:

A |   6   6   0   0  24  24   0   0   0   6   6
C |   6  78  96  96  24  24   1  96   0   6  75
G |   6   6   0   0  24  24  89   0  96   9   6
T |  78   6   0   0  24  24   6   0   0  75   9

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updated Tue Dec 17 04:40:29 2024