interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF A NUCLEOSOME CONTAINING LEISHMANIA HISTONE H3
(HISTONE H3)
referenceKurumizaka et al. 'Nucleic 47 11637 2019
sourceLEISHMANIA MAJOR
experimentX-ray (resolution=3.63, R-factor=0.223)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes6kxv_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  LCRT----         +-----------------------------8hr1_E    
                 +-8 
  --RT----       ! +-----------------------------8grq_A    
                 ! 
  --RT----       !                               +8u14_G    
                 !                             +-1 
  --RA----       !                   +---------3 +1zla_C    
               --9                   !         ! 
  --RG----       !             +-----4         +8ox0_C    
                 !             !     ! 
  --RG----       !       +-----5     +---------5x0y_G    
                 !       !     ! 
  --RG----       !     +-6     +---------------8jla_C    
                 !     ! ! 
  ----RA--       +-----7 +---------------------6g0l_D    
                       ! 
  --RA--RA             !                       +6a5l_g    
                       +-----------------------2 
  --RG----                                     +8txv_G    
               

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updated Sun Aug 3 12:11:12 2025