interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF A NUCLEOSOME CONTAINING LEISHMANIA HISTONE H3
(HISTONE H3)
referenceKurumizaka et al. 'Nucleic 47 11637 2019
sourceLEISHMANIA MAJOR
experimentX-ray (resolution=3.63, R-factor=0.223)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes6kxv_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RT----           +-----------------------------8grq_A    
                   +-7 
  LCRT----         ! +-----------------------------8hr1_E    
                   ! 
  --RG----         !                               +8txv_G    
                   !                             +-1 
  --RA----         !                   +---------2 +1zla_C    
                 +-8                   !         ! 
  --RG----       ! !              +----3         +8ox0_C    
                 ! !              !    ! 
  --RG----       ! !       +------4    +---------5x0y_G    
                 ! !       !      ! 
  --RG----     --9 !    +--5      +--------------8jla_C    
                 ! !    !  ! 
  ----RA--       ! +----6  +---------------------6g0l_D    
                 !      ! 
  --RA--RA       !      +------------------------6a5l_g    
                 ! 
  --RT----       +-----------------------------8u14_G    
               

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updated Wed Dec 18 04:31:41 2024