interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF A NUCLEOSOME CONTAINING LEISHMANIA HISTONE H3
(HISTONE H3)
referenceKurumizaka et al. 'Nucleic 47 11637 2019
sourceLEISHMANIA MAJOR
experimentX-ray (resolution=3.63, R-factor=0.223)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes6kxv_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  YA--------RT                  +-------------------7wlr_E    
                             +--4 
  --RA--------               !  !         +---------7nky_e    
                       +-----5  +---------2 
  ----------RT         !     !            +---------7lyb_G    
                       !     ! 
  ----------RT         !     +----------------------7zs9_e    
                       ! 
  ------IT--RA       +-7                     +------7k78_E    
                     ! !        +------------1 
  ----RAETRT--       ! !     +--3            +------4ne1_p    
                     ! !     !  ! 
  ----------RT     --8 +-----6  +-------------------1u35_G    
                     !       ! 
  ----------RA       !       +----------------------6t7a_C    
                     ! 
  ----------RT       +-----------------------------7lya_E    
                   

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updated Fri Sep 13 22:30:08 2024