6kxv_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF A NUCLEOSOME CONTAINING LEISHMANIA HISTONE H3 (HISTONE H3)
reference	Kurumizaka et al. 'Nucleic 47 11637 2019
source	LEISHMANIA MAJOR
experiment	X-ray (resolution=3.63, R-factor=0.223)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes	6kxv_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6kxv_A interface=1, Rwrpgtcaireirkfqkstslliqcapfqrlvrevssaqkeglrfqssaimalqeateayivslmadtnlacihakrvtiqpkdiqlalrlrge

  
  ------RT--             +-----------------------------6px1_A    
                       +-6 
  ------RC--         +-7 +-----------------------------7ux9_E    
                     ! ! 
  ------RA--       +-8 +-----------------------------7e9c_F    
                   ! ! 
  RG--------       ! +-----------------------------7ccr_H    
                   ! 
  ------RT--       !                             +8u14_G    
                 --9                     +-------1 
  ------RG--       !                     !       +8upf_G    
                   !          +----------4 
  ------RARA       !          !          !       +6a5l_g    
                   !          !          +-------2 
  ------RC--       +----------5                  +7yqk_C    
                              ! 
  ------RG--                  !                 +8txv_G    
                              +-----------------3 
  --HGRTRG--                                    +8rbx_V

home
updated Sat Jan 10 10:52:33 2026