6lbi_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FOXO1-DBD HOMODIMER BOUND TO A PALINDROMIC DNA SEQUENCE
reference	Chen et al. 'Nucleic 49 3573 2021
source	HOMO SAPIENS
experiment	X-ray (resolution=3.07, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	3co6_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6lbi_C interface=53,54,56,57,60, awgnlsyadlitkaiessaekrltlsqiyewmvksvpyfkdkgdsnssagwkNSiRHnlSlhskfirvqnegtgksswwmlnpe > 6lbi_D interface=44,49,50,52,53,56, wgnlsyadlitkaiessaekrltlsqiyewmvksvpyfkdkgdSagwkNSiRHnlSlhskfirvqnegtgksswwmlnpeg
interface signature	NSRHS/SNSRHS

Estimated binding specificities ?

readout + contact

# IC=11.729 IC/col=0.977 n_of_columns=12

specificity:

A |   0  96  96  72  24  88   0   8   8   0   0  96
C |   0   0   0   8  24   8   0   8   8   0   0   0
G |   0   0   0   8  24   0   8  72   8   0   0   0
T |  96   0   0   8  24   0  88   8  72  96  96   0

scan!

home
updated Tue Sep 10 16:27:10 2024