6lew_A : 3D-footprint complex

structure name	RVD HA SPECIFICALLY CONTACTS 5MC THROUGH VAN DER WAALS INTERACTIONS (TAL effector)
reference	Liu et al. 'To ? ? ?
source	Xanthomonas campestris pv. armoraciae
experiment	X-ray (resolution=2.48, R-factor=0.233)
structural superfamily	Thiolase-like;
sequence family	Xanthomonas avirulence protein, Avr/PthA;
redundant complexes	6jw3_B 6jw4_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6lew_A interface=33,68,102,136,238,272,297,331,399, garalealltvagelrgpplqldtgqllkiakRggvtaveavhawrnaltgaplnltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiashDggkqaletvqrllpvlcqahgltpeqvvaiashDggkqaletvqallpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaiashAggkqaletvqrllpvlcqahgltpqqvvaiasnNggkqaletvqrgltpqqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiasnNggkqaletvqrllpvlcqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashDggkqaletvqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpaltndhlvalaclggrpaldavkkleh
interface signature	RDDDANDND

Estimated binding specificities ?

readout + contact

# IC=8.556 IC/col=0.713 n_of_columns=12

specificity:

A |   0  24   0   0   5  24  24  56   0   0   0  62
C |   0  24  75   0  73  24  24  16   0   0   0  11
G |  96  24   5  96   5  24  24  11  96  96  96  12
T |   0  24  16   0  13  24  24  13   0   0   0  11

scan!

home
updated Wed Dec 18 04:35:02 2024