6lnb_BCDEFG : 3D-footprint complex

structure name	CRYOEM STRUCTURE OF CASCADE-TNIQ-DSDNA COMPLEX
source	VIBRIO CHOLERAE
experiment	NMR
reference complex	6vbw_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6lnb_B interface=298, klptnlayersidpsdvcffvvwpddrktpltynsrtphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvfteksrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlspaqetindmhflmanlikggMfqh > 6lnb_C interface=5,101,226,329,331, klptNlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksataealaqgnphqvdfchvpygashiecsfsvsfsselrqpyKcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFtesrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlstpaqetindmhflmanlikggMfQhk > 6lnb_D interface=68,69,70,226,230,333,335, klptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksataealaqgNPHqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFtqnSrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfQh > 6lnb_E interface=66,69,70,226,228,229,231,331, klptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksataealaQgnPHqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFtEKnSrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsapaqetindmhflmanlikggMfqhk > 6lnb_F interface=6,69,70,71,102,227,229,231,332,334, mklptNlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksataealaqgNPHqvdfchvpygashiecsfsvsfsselrqpyKcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFtQnSrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsktpaqetindmhflmanlikggMfQhk > 6lnb_G interface=68,69,70,226,230,233, klptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksataealaqgNPHqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFtekTqnSrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqhkgd
interface signature	M/NKFMQ/NPHFSMQ/QPHFEKSM/NNPHKFQSMQ/NPHFTS

Estimated binding specificities ?

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# IC=23.994 IC/col=0.960 n_of_columns=25

specificity:

A |  96   0   0  24   0  11  96   0  96   9   0  24  96   0   0   0  24  24   0   0   0   9   0  24  96
C |   0  96   0  24   0   9   0  96   0   9  96  24   0   0  96  96  24  24  96  96   0   9   0  24   0
G |   0   0  96  24  96  67   0   0   0  11   0  24   0  96   0   0  24  24   0   0  96   9  96  24   0
T |   0   0   0  24   0   9   0   0   0  67   0  24   0   0   0   0  24  24   0   0   0  69   0  24   0

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updated Sat Dec 14 16:02:13 2024