6lxn_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF C-TERMINAL DNA-BINDING DOMAIN OF ESCHERICHIA COLI OMPR IN COMPLEX WITH F1-DNA
reference	Sadotra et al. J.Struct.Biol. 213 107638 2020
source	Escherichia coli
experiment	X-ray (resolution=2.93, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;
reference complex	6lxn_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6lxn_A interface=64,67,68,71,72,91, aviafgkfklnlgtremfredepmpltsgefavlkalvshpreplsrdklmnlargreysameRsiDVqiSRlrrmveedpahpryiqtvWglgyvfvpdgskalehhhh > 6lxn_B interface=64,65,67,68,69,91, aviafgkfklnlgtremfredepmpltsgefavlkalvshpreplsrdklmnlargreysameRSiDVQisrlrrmveedpahpryiqtvWglgyvfvpdg
interface signature	RDVSRW/RSDVQW

Estimated binding specificities ?

readout + contact

# IC=11.401 IC/col=0.760 n_of_columns=15

specificity:

A |   0  24  96   0   0  24  24  24  13   0   0  13  75   0  96
C |   0  24   0  96   6  24  24  24  13   0   0   6   9  96   0
G |   0  24   0   0   6  24  24  24  54  96   0  16   6   0   0
T |  96  24   0   0  84  24  24  24  16   0  96  61   6   0   0

scan!

home
updated Tue Sep 10 16:44:30 2024