6me0_C : 3D-footprint complex

structure name	STRUCTURE OF A GROUP II INTRON RETROELEMENT PRIOR TO DNA INTEGRATION (MATURASE REVERSE TRANSCRIPTASE)
source	THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1) / THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1)
experiment	NMR
structural superfamily	DNA/RNA polymerases;
sequence family	Reverse transcriptase RNAdependent DNA pol; Group II intron, maturasespecific domain;
redundant complexes	6mec_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6me0_C interface=298,300,302,349,351,352,355,359,362,371,374,375,379,382,394, dwakanrevkrlqvriakavkegrwgkvkalqwllthsfygkalavkrvtdnsgsktpgvdgitwstqeqkaqaikslrrrgykpqplrrvyipkasgkqrplgipttkdramqalyalalepvaettadrnsygfrqgrctadaagqcftvlgrsdcakyildaditgcfdnishewlldnipldkevlrkwlksgfvwkqqlfpgvispmlanmtldgmeellkkhlrkqkvnliryaddfvvtgesketlekvttviqeflkergltlseektkvvhieegfdflgwnirkygeKlLiKpakknikafhkkirdalkelrtatqeavidtlnpiikgwanyhrnqVsKRifNradDniWhklwrwakRrhPNkpaRwtKnkyfikignrhWvfgtwrsrylikagdtriqr
interface signature	KLKVKRNDWRPNRKW

Estimated binding specificities ?

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# IC=6.672 IC/col=0.477 n_of_columns=14

specificity:

A |   0  24   9   0   9  24   0   0  24  24  24  24  24   9
C |   0  24   9   0   9  24   0  96  24  24  24  24  24  11
G |  96  24  67   0   9  24  96   0  24  24  24  24  24  67
T |   0  24  11  96  69  24   0   0  24  24  24  24  24   9

scan!

Dendrogram of similar interfaces ?

matrix format

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updated Fri Sep 13 22:37:19 2024