6mec_C : 3D-footprint complex

structure name	STRUCTURE OF A GROUP II INTRON RETROELEMENT AFTER DNA INTEGRATION (MATURASE REVERSE TRANSCRIPTASE)
source	THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1) / THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1)
experiment	NMR
structural superfamily	DNA/RNA polymerases;
sequence family	Reverse transcriptase RNAdependent DNA pol; Group II intron, maturasespecific domain;
redundant complexes	6me0
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6mec_C interface=298,300,302,349,351,352,355,359,362,375,379,382,394, dwakanrevkrlqvriakavkegrwgkvkalqwllthsfygkalavkrvtdnsgsktpgvdgitwstqeqkaqaikslrrrgykpqplrrvyipkasgkqrplgipttkdramqalyalalepvaettadrnsygfrqgrctadaagqcftvlgrsdcakyildaditgcfdnishewlldnipldkevlrkwlksgfvwkqqlfpgvispmlanmtldgmeellkkhlrkqkvnliryaddfvvtgesketlekvttviqeflkergltlseektkvvhieegfdflgwnirkygeKlLiKpakknikafhkkirdalkelrtatqeavidtlnpiikgwanyhrnqVsKRifNradDniWhklwrwakrrhpNkpaRwtKnkyfikignrhWvfgtwrsrylikagdtriqr
interface signature	KLKVKRNDWNRKW

Estimated binding specificities ?

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# IC=7.945 IC/col=0.567 n_of_columns=14

specificity:

A |   0  24   0   0  19   9   0   0  24  24  24  24  24   0
C |   0  24   9   0   9  21   0  96  24  24  24  24  24   0
G |  96  24  76   0  11  57  96   0  24  24  24  24  24  96
T |   0  24  11  96  57   9   0   0  24  24  24  24  24   0

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updated Tue Dec 17 05:55:18 2024