6mg1_AB : 3D-footprint complex

structure name	C-TERMINAL BZIP DOMAIN OF HUMAN C/EBPBETA WITH 16BP METHYLATED OLIGONUCLEOTIDE CONTAINING CONSENSUS RECOGNITION SEQUENCE-C2 CRYSTAL FORM
reference	Horton et al. 'Nucleic 47 1774 2019
source	Homo sapiens
experiment	X-ray (resolution=1.75, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6mg1_A interface=10,13,16,17,20,21, khsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpepl > 6mg1_B interface=10,13,16,17,20,21, khsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpepl
interface signature	RNAVSR/RNAVSR

Estimated binding specificities ?

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# IC=8.926 IC/col=0.893 n_of_columns=10

specificity:

A |  64   0   0  16   0   0  24  96  96   8
C |   8   0   0  16  96   0  24   0   0  16
G |  16   0   0  48   0  96  24   0   0   8
T |   8  96  96  16   0   0  24   0   0  64

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updated Sat Dec 14 16:19:24 2024