6mg2_AB : 3D-footprint complex

structure name	C-TERMINAL BZIP DOMAIN OF HUMAN C/EBPBETA WITH 16BP METHYLATED OLIGONUCLEOTIDE CONTAINING CONSENSUS RECOGNITION SEQUENCE-C2221 CRYSTAL FORM
reference	Horton et al. 'Nucleic 47 1774 2019
source	Homo sapiens
experiment	X-ray (resolution=1.93, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6mg2_A interface=11,14,17,18,21,22, mkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfk > 6mg2_B interface=11,14,17,18,21,22, mkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpe
interface signature	RNAVSR/RNAVSR

Estimated binding specificities ?

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# IC=9.298 IC/col=0.930 n_of_columns=10

specificity:

A |  67   0   0   9   0   0  24  96  96  11
C |  11   0   0   9  96   0  24   0   0   9
G |   9   0   0  67   0  96  24   0   0   9
T |   9  96  96  11   0   0  24   0   0  67

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updated Sat Dec 14 16:19:31 2024