6mg3_AB : 3D-footprint complex

structure name	V285A MUTANT OF THE C-TERMINAL BZIP DOMAIN OF HUMAN C/EBPBETA WITH 16BP METHYLATED OLIGONUCLEOTIDE CONTAINING CONSENSUS RECOGNITION SEQUENCE
reference	Horton et al. 'Nucleic 47 1774 2019
source	Homo sapiens
experiment	X-ray (resolution=2.05, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6mg3_A interface=10,13,16,17,20,21, khsdeykirRerNniAArkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfk > 6mg3_B interface=10,13,16,17,20,21, khsdeykirRerNniAArkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpe
interface signature	RNAASR/RNAASR

Estimated binding specificities ?

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# IC=3.919 IC/col=0.435 n_of_columns=9

specificity:

A |   7   2  12  21  12  25  87  70  13
C |   9   1  13  30  12  21   0   8  29
G |  10   0  59  22  60  26   8   9  13
T |  70  93  12  23  12  24   1   9  41

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updated Sat Dec 14 16:19:38 2024