6ml6_A : 3D-footprint complex

structure name	ZBTB24 ZINC FINGERS 4-8 WITH 19+1MER DNA OLIGONUCLEOTIDE (SEQUENCE 4 WITH A CPA 5MC MODIFICATION) (Zinc finger and BTB domain-containing protein 24)
reference	Horton et al. 'Nucleic 47 8388 2019
source	Mus musculus
experiment	X-ray (resolution=1.54, R-factor=0.202)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	6ml4_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ml6_A interface=44,46,47,50,71,72,74,75,100,101,102,103,105,106,128,130,131, gsksftcdqcgkyfsqkrqlkshyrvhtghslpecshchrkfmDvSQlkKhlrthtgekpftceicgksfTAkSSlqthirihrgekpyscsicgkcfsDSSAkRRhcilhtgkkpfscpecglqfaRlDNlkahlkihskek
interface signature	DSQKTASSDSSARRRDN

Estimated binding specificities ?

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# IC=13.342 IC/col=1.112 n_of_columns=12

specificity:

A |  96   0   0   0   1   0  12   0  10  96   0   0
C |   0   0   0   0  85  85  10   0  12   0  96   0
G |   0  96  96   0   0   1  10  96  64   0   0  96
T |   0   0   0  96  10  10  64   0  10   0   0   0

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updated Fri Sep 13 01:06:19 2024