6mrj_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF H.PYLORI NIKR IN COMPLEX WITH DNA
reference	de Serrano et al. 'To ? ? ?
source	Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695)
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	ACT-like;Ribbon-helix-helix;
reference complex	6mrj_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6mrj_A interface=5,7,9, dsiiRfSvSlqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltka > 6mrj_B interface=6,8,10,32, ddsiiRfSvSlqqnlldeldnriikngyssrSelvrdmireklvednwaednpndeskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltkassfeyne > 6mrj_C interface=6,8,10, ddsiiRfSvSlqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltkassfeyne > 6mrj_D interface=7,9,11,72, kddsiiRfSvSlqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavlvviydhhqRelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltkass
interface signature	RSS/RSSS/RSS/RSSR

Estimated binding specificities ?

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# IC=16.088 IC/col=0.596 n_of_columns=27

specificity:

A |  61   0  90  74   1  96   0   5  24  24  24  24  24  24  24  24  24  24  24  73  30   0  92  69   0  90  96
C |   1   0   0   7  95   0  96  11  24  24  24  24  24  24  24  24  24  24  24   9   1   0   1   9   0   1   0
G |  34   0   1   5   0   0   0   9  24  24  24  24  24  24  24  24  24  24  24   7  65   0   3   9   0   1   0
T |   0  96   5  10   0   0   0  71  24  24  24  24  24  24  24  24  24  24  24   7   0  96   0   9  96   4   0

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updated Tue Sep 10 16:57:14 2024