6mrj_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF H.PYLORI NIKR IN COMPLEX WITH DNA
reference	de Serrano et al. 'To ? ? ?
source	Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695)
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	ACT-like;Ribbon-helix-helix;
reference complex	6mrj_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6mrj_A interface=5,7,9, dsiiRfSvSlqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltka > 6mrj_B interface=6,8,10,32, ddsiiRfSvSlqqnlldeldnriikngyssrSelvrdmireklvednwaednpndeskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltkassfeyne > 6mrj_C interface=6,8,10, ddsiiRfSvSlqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltkassfeyne > 6mrj_D interface=7,9,11,72, kddsiiRfSvSlqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavlvviydhhqRelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltkass
interface signature	RSS/RSSS/RSS/RSSR

Estimated binding specificities ?

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# IC=16.137 IC/col=0.598 n_of_columns=27

specificity:

A |  60   0  94  61   0  96   0  11  24  24  24  24  24  24  24  24  24  24  24  74   7   0  92  57   0  90  96
C |   0   0   0  13  96   0  96  11  24  24  24  24  24  24  24  24  24  24  24   8   0   0   0  13   0   1   0
G |  36   0   1  13   0   0   0   7  24  24  24  24  24  24  24  24  24  24  24   7  88   0   4  13   0   1   0
T |   0  96   1   9   0   0   0  67  24  24  24  24  24  24  24  24  24  24  24   7   1  96   0  13  96   4   0

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updated Wed Jul 30 21:49:22 2025