6mrj_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF H.PYLORI NIKR IN COMPLEX WITH DNA
reference	de Serrano et al. 'To ? ? ?
source	Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695)
experiment	X-ray (resolution=2.80, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6mrj_A interface=5,7,9, dsiiRfSvSlqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltka > 6mrj_B interface=6,8,10,32, ddsiiRfSvSlqqnlldeldnriikngyssrSelvrdmireklvednwaednpndeskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltkassfeyne > 6mrj_C interface=6,8,10, ddsiiRfSvSlqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltkassfeyne > 6mrj_D interface=7,9,11,72, kddsiiRfSvSlqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavlvviydhhqRelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltkass
interface signature	RSS/RSSS/RSS/RSSR

Estimated binding specificities ?

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# IC=15.998 IC/col=0.593 n_of_columns=27

specificity:

A |  59   0  92  67   0  96   0   7  24  24  24  24  24  24  24  24  24  24  24  71  31   0  92  71   0  88  96
C |   0   0   0  11  96   0  96   7  24  24  24  24  24  24  24  24  24  24  24   9   0   0   1   7   0   1   0
G |  36   0   3   7   0   0   0  11  24  24  24  24  24  24  24  24  24  24  24   7  65   0   3  11   0   3   0
T |   1  96   1  11   0   0   0  71  24  24  24  24  24  24  24  24  24  24  24   9   0  96   0   7  96   4   0

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updated Sat Dec 14 16:21:08 2024