6mrj_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF H.PYLORI NIKR IN COMPLEX WITH DNA
reference	de Serrano et al. 'To ? ? ?
source	Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695)
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	ACT-like;Ribbon-helix-helix;
reference complex	6mrj_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6mrj_A interface=5,7,9, dsiiRfSvSlqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltka > 6mrj_B interface=6,8,10,32, ddsiiRfSvSlqqnlldeldnriikngyssrSelvrdmireklvednwaednpndeskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltkassfeyne > 6mrj_C interface=6,8,10, ddsiiRfSvSlqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltkassfeyne > 6mrj_D interface=7,9,11,72, kddsiiRfSvSlqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavlvviydhhqRelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglrgvkfakltkass
interface signature	RSS/RSSS/RSS/RSSR

Estimated binding specificities ?

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# IC=16.125 IC/col=0.597 n_of_columns=27

specificity:

A |  58   0  95  65   1  96   0  15  24  24  24  24  24  24  24  24  24  24  24  72  17   0  92  61   0  92  96
C |   0   0   0   9  95   0  96   7  24  24  24  24  24  24  24  24  24  24  24  10   0   0   1  13   0   2   0
G |  38   0   0  15   0   0   0   9  24  24  24  24  24  24  24  24  24  24  24   5  79   0   3  15   0   1   0
T |   0  96   1   7   0   0   0  65  24  24  24  24  24  24  24  24  24  24  24   9   0  96   0   7  96   1   0

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updated Tue Jan 6 08:30:21 2026