6mzm_ABTW : 3D-footprint complex

structure name	HUMAN TFIID BOUND TO PROMOTER DNA AND TFIIA
source	HOMO SAPIENS
experiment	NMR
structural superfamily	Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;
reference complex	6mzm_W
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6mzm_A interface=256,257,267, iiqhsipavelrqpffpthmgpiklrqfhrpplkkysfgalsqpgphsvqpllkhikkkakmreqerqasgggemffmrtpqdltgkdgdlilaeyseengplmmqvgmatkiknyykrkpgkdpgapdckygetvychtspflgslhpgqllqafennlfrapiylhkmpetdfliirtrqgyyirelvdifvvgqqcplfevpgpnskranthirdflqvfiyrlfwkskdrprrirmedikkafpshsessiRKrlklcadfkRtgmdsnwwvlksdfrlpteeeiramvspeqccayysmiaaeqrlkdagygeksfkiddevrtapwnttrafiaamkgkcllevtgvadptgcgegfsyvkipnkdadlrrlslknakqllrkfgvpeeeikklsrwevidvvrtmstesvaehqerykeecqrifdlqnkvlsstevl > 6mzm_B interface= fesprpyklthqvvcinninfqrksvvgfveltifptvanlnriklnskqcriyrvrindleaafiyndptlevchseskqrnlnyfsnayaaavsavdpdagngelcikvpselwkhvdelkvlkihinfsldqpkgglhfvvpsvegsmaergahvfscgyqnstrfwfpcvdsyselctwkleftvdaamvavsngdlvetvythdmrkktfhymltiptaasnislaigpfeilvdpymhevthfclpqllPLlkhttsylhEvfefyeeiltcrypyscfktvfideayvevaayasmsifstnllhsamiidetpltrrclaqslaqqffgcfisrmswsdewvlkgisgyiyglwmkktfgvneyrhwikeeldkivayelktggvllhpifgggkekdnpashlhfsikhphtlsweyysmfqckahlvmrlienrismefmlqvfnkllslastassqkfqshmwsqmlvstsgflksisnvsgkdiqplikqwvdqsgvvkfygsfafnrkrnvleleikqdytspgtqkyvgplkvtvqeldgsfnhtlqieenslkhdipchsksrrnkkkkiplmngeevdmdlsamdadspllwiridpdmsvlrkvefeqadfmwqyqlryerdvvaqqesilalekfptpasrlaltdileqeqcfyrvrmsacfclakiansmvstwtgppamkslftrmfcckscpnivktnnfmsfqsyflqktmpvamallrdvhnlcpkevltfildlikyndnrknkfsdnyyraemidalansvtpavsvnnevrtldnlnpdvrlileeitrflnmekllpsyrhtitvsclrairvlqknghvpsdpalfksyaeyghfvdiriaaleavvdytkvdrsyeelqwllnmiqndpvpyvrhkilnmltknppftknmesplcnealvdqlwklmnsgtshdwrlrcgavdlyftlfglsrpscl > 6mzm_T interface=9,11,39,54,56,62,64,99,101,130,131,145,147,153,155, sgivpqlqNiVstvnlgckldlktialrarnaeynpkrFaavimrireprttaLiFssgkmVcTgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkgfrkt > 6mzm_W interface= tvpklyrsViEdvindvrdiflddgvdeqvlmelktlwEnklmdtenvvvcqyDkIhrsknKwKfhlkdgimnlngrdyifskaigdaew
interface signature	RKR/PLE/NVFLFVTNVFPLFVT/VEEDIKK

Estimated binding specificities ?

contact

# IC=13.295 IC/col=0.218 n_of_columns=61

specificity:

A |   0  96   0  96  96  96  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  11  24  24  24   9  24   9  96
C |   0   0   0   0   0   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  67  24  24  24  67  24  11   0
G |   0   0   0   0   0   0   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   9  24  24  24   9  24  67   0
T |  96   0  96   0   0   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   9  24  24  24  11  24   9   0

scan!

home
updated Sat Dec 14 16:21:53 2024