6n1p_ABDFGH : 3D-footprint complex

structure name	DIHEDRAL OLIGOMERIC COMPLEX OF GYRA N-TERMINAL FRAGMENT WITH DNA, SOLVED BY CRYOEM IN C2 SYMMETRY
source	STREPTOCOCCUS PNEUMONIAE G54
experiment	NMR
structural superfamily	Type II DNA topoisomerase;
reference complex	6n1p_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6n1p_A interface=422,423,425,426, ltkemkasfidyamsvivaralpdvrdglkpvhrrilygmnelgvtpdkphkksaritgdvmgkyhphgdssiyeamvrmaqwwsyrymlvdghgnfgsmdgdsaaaqrytearmskialemlrdinkntvdfvdnydanereplvlparfpnllvngatgiavgmatnipphnlgetidavklvmdnpevttkdlmevlpgpdfptgalvmgksgihkayetgkgsivlrsrteiettktgrerivvtefpymvnktkvhehivrlvqekriegitavrdesnregvrfvievkrdasanvilnnlfkmtqmqtnfgfnmlaiqngipkilslrqildayiehqkevvvrrtrfdkekaearahilegllialdhideviriirasetdaeaqaelmskfklserqsqaildmrlrrltgLErDKiqseyddllaliadladilakpervsqiikdeldevkrkfsdkrrtelmv > 6n1p_B interface= lvnvnltkemkasfidyamsvivaralpdvrdglkpvhrrilygmnelgvtpdkphkksaritgdvmgkyhphgdssiyeamvrmaqwwsyrymlvdghgnfgsmdgdsaaaqrytearmskialemlrdinkntvdfvdnydanereplvlparfpnllvngatgiavgmatnipphnlgetidavklvmdnpevttkdlmevlpgpdfptgalvmgksgihkayetgkgsivlrsrteiettktgrerivvtefpymvnktkvhehivrlvqekriegitavrdesnregvrfvievkrdasanvilnnlfkmtqmqtnfgfnmlaiqngipkilslrqildayiehqkevvvrrtrfdkekaearahilegllialdhideviriirasetdaeaqaelmskfklserqsqaildmrlRRlTGlerdkiqseyddllaliadladilakpervsqiikdeldevkrkfsdkrrtelmv > 6n1p_D interface=115, lvnvnltkemkasfidyamsvivaralpdvrdglkpvhrrilygmnelgvtpdkphkksaritgdvmgkyhphgdssiyeamvrmaqwwsyrymlvdghgnfgsmdgdsaaaqrYtearmskialemlrdinkntvdfvdnydanereplvlparfpnllvngatgiavgmatnipphnlgetidavklvmdnpevttkdlmevlpgpdfptgalvmgksgihkayetgkgsivlrsrteiettktgrerivvtefpymvnktkvhehivrlvqekriegitavrdesnregvrfvievkrdasanvilnnlfkmtqmqtnfgfnmlaiqngipkilslrqildayiehqkevvvrrtrfdkekaearahilegllialdhideviriirasetdaeaqaelmskfklserqsqaildmrlrrltglerdkiqseyddllaliadladilakpervsqiikdeldevkrkfsdkrrtelmv > 6n1p_F interface=115, lvnvnltkemkasfidyamsvivaralpdvrdglkpvhrrilygmnelgvtpdkphkksaritgdvmgkyhphgdssiyeamvrmaqwwsyrymlvdghgnfgsmdgdsaaaqrYtearmskialemlrdinkntvdfvdnydanereplvlparfpnllvngatgiavgmatnipphnlgetidavklvmdnpevttkdlmevlpgpdfptgalvmgksgihkayetgkgsivlrsrteiettktgrerivvtefpymvnktkvhehivrlvqekriegitavrdesnregvrfvievkrdasanvilnnlfkmtqmqtnfgfnmlaiqngipkilslrqildayiehqkevvvrrtrfdkekaearahilegllialdhideviriirasetdaeaqaelmskfklserqsqaildmrlrrltglerdkiqseyddllaliadladilakpervsqiikdeldevkrkfsdkrrtelmv > 6n1p_G interface=422,423,426, ltkemkasfidyamsvivaralpdvrdglkpvhrrilygmnelgvtpdkphkksaritgdvmgkyhphgdssiyeamvrmaqwwsyrymlvdghgnfgsmdgdsaaaqrytearmskialemlrdinkntvdfvdnydanereplvlparfpnllvngatgiavgmatnipphnlgetidavklvmdnpevttkdlmevlpgpdfptgalvmgksgihkayetgkgsivlrsrteiettktgrerivvtefpymvnktkvhehivrlvqekriegitavrdesnregvrfvievkrdasanvilnnlfkmtqmqtnfgfnmlaiqngipkilslrqildayiehqkevvvrrtrfdkekaearahilegllialdhideviriirasetdaeaqaelmskfklserqsqaildmrlrrltgLErdKiqseyddllaliadladilakpervsqiikdeldevkrkfsdkrrtelmv > 6n1p_H interface= lvnvnltkemkasfidyamsvivaralpdvrdglkpvhrrilygmnelgvtpdkphkksaritgdvmgkyhphgdssiyeamvrmaqwwsyrymlvdghgnfgsmdgdsaaaqrytearmskialemlrdinkntvdfvdnydanereplvlparfpnllvngatgiavgmatnipphnlgetidavklvmdnpevttkdlmevlpgpdfptgalvmgksgihkayetgkgsivlrsrteiettktgrerivvtefpymvnktkvhehivrlvqekriegitavrdesnregvrfvievkrdasanvilnnlfkmtqmqtnfgfnmlaiqngipkilslrqildayiehqkevvvrrtrfdkekaearahilegllialdhideviriirasetdaeaqaelmskfklserqsqaildmrlRRltGlerdkiqseyddllaliadladilakpervsqiikdeldevkrkfsdkrrtelmv
interface signature	LEDK/RRTG/Y/Y/LEK/RRG

Estimated binding specificities ?

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# IC=7.099 IC/col=0.161 n_of_columns=44

specificity:

A |   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  13  24  24  24  13  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0
C |   0  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  16  24  24  24  16  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96
G |   0   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  54  24  24  24  13  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0
T |  96   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  13  24  24  24  54  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0

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updated Tue Sep 10 17:02:07 2024