interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF TBP-HOOGSTEEN CONTAINING DNA COMPLEX
(TATA-box-binding protein 1)
referenceSchumacher et al. Angew.Chem.Int.Ed.Engl. 58 12010 2019
sourceArabidopsis thaliana
experimentX-ray (resolution=2.75, R-factor=0.235)
structural superfamilyTATA-box binding protein-like;
sequence familyTranscription factor TFIID or TATAbinding;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=8.431 IC/col=1.054 n_of_columns=8 specificity:   
A |  13   0  13   0   0  96   0  96
C |  54   0  13   0   0   0   0   0
G |  16  96  16   0   0   0   0   0
T |  13   0  54  96  96   0  96   0
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updated Tue Dec 17 06:00:05 2024