6nsm_AB : 3D-footprint complex

structure name	TETR FAMILY TRANSCRIPTIONAL REGULATOR CIFR C99T-C107S-C181R CYSTEINES MUTANT COMPLEXED WITH 26BP DOUBLE-STRAND OPERATOR DNA
reference	Madden et al. 'To ? ? ?
source	Pseudomonas aeruginosa
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	6nsn_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6nsm_A interface=2,4,31,41,42,43,44,46, tRgRprafdrdtalqramdvfwvrgyegasLaalteameiRPPSlYaafgskeglfrealahylgqhgryrrdvldgapsaregvaellretvarftsdefprgslvvlaaltgtpeseavrdalsaergesirlfrermrrgiadgdlaadtdmeelatfyatvlfglsvqakdrvprerllavveralrawp > 6nsm_B interface=2,29,39,40,41,44, gRprafdrdtalqramdvfwvrgyegasLaalteameiRPPslYaafgskeglfrealahylgqhgryrrdvldgapsaregvaellretvarftsdefprgslvvlaaltgtpeseavrdalsaergesirlfrermrrgiadgdlaadtdmeelatfyatvlfglsvqakdrvprerllavveralrawp
interface signature	RRLRPPSY/RLRPPY

Estimated binding specificities ?

contact

# IC=18.715 IC/col=0.814 n_of_columns=23

specificity:

A |   0   0  24   0   0  10   3   3  96   0   7  24  24  24  24  69   0   0  92   3  24  93  96
C |   0   0  24   0   0  10   5   3   0   0  78  24  24  24  24  10  96   0   3   3  24   3   0
G |   0   0  24   0   0  10  85   3   0   0   7  24  24  24  24   7   0   0   0   3  24   0   0
T |  96  96  24  96  96  66   3  87   0  96   4  24  24  24  24  10   0  96   1  87  24   0   0

scan!

home
updated Tue Jan 6 09:07:36 2026