6nsm_AB : 3D-footprint complex

structure name	TETR FAMILY TRANSCRIPTIONAL REGULATOR CIFR C99T-C107S-C181R CYSTEINES MUTANT COMPLEXED WITH 26BP DOUBLE-STRAND OPERATOR DNA
reference	Madden et al. 'To ? ? ?
source	Pseudomonas aeruginosa
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	6nsn_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6nsm_A interface=2,4,31,41,42,43,44,46, tRgRprafdrdtalqramdvfwvrgyegasLaalteameiRPPSlYaafgskeglfrealahylgqhgryrrdvldgapsaregvaellretvarftsdefprgslvvlaaltgtpeseavrdalsaergesirlfrermrrgiadgdlaadtdmeelatfyatvlfglsvqakdrvprerllavveralrawp > 6nsm_B interface=2,29,39,40,41,44, gRprafdrdtalqramdvfwvrgyegasLaalteameiRPPslYaafgskeglfrealahylgqhgryrrdvldgapsaregvaellretvarftsdefprgslvvlaaltgtpeseavrdalsaergesirlfrermrrgiadgdlaadtdmeelatfyatvlfglsvqakdrvprerllavveralrawp
interface signature	RRLRPPSY/RLRPPY

Estimated binding specificities ?

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# IC=17.432 IC/col=0.758 n_of_columns=23

specificity:

A |   0   5  24  83   4  96   0   8  24  24  24  24  24  96   0  84   4  70  96  96  24  96  96
C |   0   4  24   4   5   0   0   8  24  24  24  24  24   0   0   4  83  10   0   0  24   0   0
G |   0   0  24   5   4   0  96   4  24  24  24  24  24   0   0   4   5   8   0   0  24   0   0
T |  96  87  24   4  83   0   0  76  24  24  24  24  24   0  96   4   4   8   0   0  24   0   0

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updated Tue Sep 10 17:26:40 2024