6o6p_AB : 3D-footprint complex

structure name	STRUCTURE OF THE REGULATOR FASR FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH DNA
reference	Trajtenberg et al. 'Nat 11 3703 2020
source	Mycobacterium tuberculosis
experiment	X-ray (resolution=3.85, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	6o6p_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6o6p_A interface=36,37,38,41, rderrgqllvvasdvfvdrgyhaagmdeiadragvSKPvlYqhfssklelylavlhrhvenlvsgvhqalstttdnrqrlhvavqaffdfiehdsqgyrlifendfvtepevaaqvrvatescidavfalisadsgldphrarmiavglvgmsvdcarywldadkpisksdavegtvqfawgglshvp > 6o6p_B interface=35,36,37,40, derrgqllvvasdvfvdrgyhaagmdeiadragvSKPvlYqhfssklelylavlhrhvenlvsgvhqalstttdnrqrlhvavqaffdfiehdsqgyrlifendfvtepevaaqvrvatescidavfalisadsgldphrarmiavglvgmsvdcarywldadkpisksdavegtvqfawgglshvp
interface signature	SKPY/SKPY

Estimated binding specificities ?

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# IC=7.109 IC/col=0.547 n_of_columns=13

specificity:

A |  15  96   0  24  24  24  24  24  21   0   0  89  12
C |  12   0   0  24  24  24  24  24  51   0   0   1  57
G |  57   0  96  24  24  24  24  24  12  96   0   0  12
T |  12   0   0  24  24  24  24  24  12   0  96   6  15

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updated Tue Sep 10 17:33:29 2024