6oen_ADN : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF MOUSE RAG1/2 PRC COMPLEX (DNA1)
source	MUS MUSCULUS / HOMO SAPIENS
experiment	NMR
structural superfamily	Galactose oxidase, central domain;
reference complex	6cg0_D 6cij_D 6oem_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6oen_A interface=3,7,79,102,105,576, trRaqkHrlrelkiqvkefadkeeggdvkavcltlfllalrarnehrqadeleaimqgrgsglqpavclairvntflsCsqyhkmyrtvkaitgrqifqplHalRnaekvllpgyhpfewqpplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescdgmgdvsekhgsgpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvrevegleasgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkrmnlkpimrmngnfarklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsigawanqsgnklfrrfrkmnarQskcyemedvlkhhwlytskylqkfmnahna > 6oen_D interface= msLqmvTvghnialiqpgfslmnfdgqvfffgqkgwpkrscptgvfhfdikqnhlklkpaifskdscylpplrypatcSykgkhqyiihggktpnnelsdkIyiMsvacknnkkvtfrctekdlvgdvpepryghsidvvysrgksmgvlfggrsympstqrttekwnsvadclphvflidfefgcatsyilpelqdglsfhvsiarndtvyilgghslasnirpanlyrirvdlplgtpavnctvlpggisvssailtqtnndefvivggyqlenqkrmvcslvslgdntieisemetpdwtsdikhskiwfgsnmgngtiflgipgdnkqamseafyfytlrcs > 6oen_N interface=4,22,26, psaFflfcseyrpkikgehpgIgdvAkklgemwnnt
interface signature	RHCHRQ/LTSIM/FIA

Estimated binding specificities ?

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# IC=5.077 IC/col=0.231 n_of_columns=22

specificity:

A |   0   0  24  24  24  24  24  24  24  24  24  24  24   8  19  24  24  24  24  24   0   8
C |   0   0  24  24  24  24  24  24  24  24  24  24  24  54  17  24  24  24  24  24   0  10
G |  96   0  24  24  24  24  24  24  24  24  24  24  24  17  17  24  24  24  24  24   0  78
T |   0  96  24  24  24  24  24  24  24  24  24  24  24  17  43  24  24  24  24  24  96   0

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updated Tue Sep 10 17:43:17 2024