6oen_BCH : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF MOUSE RAG1/2 PRC COMPLEX (DNA1)
source	MUS MUSCULUS / HOMO SAPIENS
experiment	NMR
structural superfamily	Galactose oxidase, central domain;
reference complex	6cg0_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6oen_B interface= mslqmvtvghnialiqpgfslmnfdgqvfffgqkgwpkrscptgvfhfdikqnhlklkpaifskdscylpplrypatcsykgkhqyiihggktpnnelsdkiyimsvacknnkkvtfrctekdlvgdvpepryghsidvvysrgksmgvlfggrsympstqrttekwnsvadclphvflidfefgcatsyilpelqdglsfhvsiarndtvyilgghslasnirpanlyrirvdlplgtpavnctvlpggisvssailtqtnndefvivggyqlenqkrmvcslvslgdntieisemetpdwtsdikhskiwfgsnmgngtiflgipgdnkqamseafyfytlrcs > 6oen_C interface=8,84,88,110,578,579, hllsltrRaqkhrlrelkiqvkefadkeeggdvkavcltlfllalrarnehrqadeleaimqgrgsglqpavclairvntflsCsqyHkmyrtvkaitgrqifqplhalRnaekvllpgyhpfewqpplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescdgmgdvsekhgsgpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvrevegleasgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkrmnlkpimrmngnfarklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsiggnqsgnklfrrfrkmnaRQskcyemedvlkhhwlytskylqkfmnahna > 6oen_H interface=3,6,7,22,26, afFlfCSeyrpkikgehpglsIgdvAkklgemwnntaaddkqpyekkaaklkeky
interface signature	/RCHRRQ/FCSIA

Estimated binding specificities ?

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# IC=8.933 IC/col=0.525 n_of_columns=17

specificity:

A |   0   1   8  24  93   2  24  24  24  24  24  11  81  24   2  63   2
C |   0   0   5  24   2   4  24  24  24  24  24   5   0  24  87  11  87
G |  96   2  14  24   1  90  24  24  24  24  24  10  13  24   2  11   5
T |   0  93  69  24   0   0  24  24  24  24  24  70   2  24   5  11   2

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updated Sat Dec 14 17:12:12 2024