6oen_BCH : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF MOUSE RAG1/2 PRC COMPLEX (DNA1)
source	MUS MUSCULUS / HOMO SAPIENS
experiment	NMR
structural superfamily	Galactose oxidase, central domain;
reference complex	6cg0_D 6cij_D 6oem_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6oen_B interface= mslqmvtvghnialiqpgfslmnfdgqvfffgqkgwpkrscptgvfhfdikqnhlklkpaifskdscylpplrypatcsykgkhqyiihggktpnnelsdkiyimsvacknnkkvtfrctekdlvgdvpepryghsidvvysrgksmgvlfggrsympstqrttekwnsvadclphvflidfefgcatsyilpelqdglsfhvsiarndtvyilgghslasnirpanlyrirvdlplgtpavnctvlpggisvssailtqtnndefvivggyqlenqkrmvcslvslgdntieisemetpdwtsdikhskiwfgsnmgngtiflgipgdnkqamseafyfytlrcs > 6oen_C interface=8,84,88,110,578,579, hllsltrRaqkhrlrelkiqvkefadkeeggdvkavcltlfllalrarnehrqadeleaimqgrgsglqpavclairvntflsCsqyHkmyrtvkaitgrqifqplhalRnaekvllpgyhpfewqpplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescdgmgdvsekhgsgpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvrevegleasgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkrmnlkpimrmngnfarklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsiggnqsgnklfrrfrkmnaRQskcyemedvlkhhwlytskylqkfmnahna > 6oen_H interface=3,6,7,22,26, afFlfCSeyrpkikgehpglsIgdvAkklgemwnntaaddkqpyekkaaklkeky
interface signature	/RCHRRQ/FCSIA

Estimated binding specificities ?

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# IC=8.878 IC/col=0.522 n_of_columns=17

specificity:

A |   0   1  11  24  93   2  24  24  24  24  24  11  84  24   2  62   0
C |   0   0  15  24   2   2  24  24  24  24  24  11   0  24  87  14  94
G |  96   2  11  24   0  90  24  24  24  24  24  15  12  24   5   8   0
T |   0  93  59  24   1   2  24  24  24  24  24  59   0  24   2  12   2

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updated Tue Sep 10 17:44:05 2024