6oep_AC : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF MOUSE RAG1/2 12RSS-NFC/23RSS-PRC COMPLEX (DNA1)
source	MUS MUSCULUS
experiment	NMR
structural superfamily	Galactose oxidase, central domain;
reference complex	6cg0_D 6oem_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6oep_A interface=43,317,442,443,444,446, rraqkhrlrelkiqvkefadkeeggdvkavcltlfllalrarNehrqadeleaimqgrgsglqpavclairvntflscsqyhkmyrtvkaitgrqifqplhalrnaekvllpgyhpfewqpplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescdgmgdvsekpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvrevegleaSgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkrmnlkpIMRmNgnfarklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsigawasegnqsgnklfrrfrkmnarqskcyemedvlkhhwlytskylqkfmnahna > 6oep_C interface=8,12,88,107,110,217,581,582, hllsltrRaqkHrlrelkiqvkefadkeeggdvkavcltlfllalrarnehrqadeleaimqgrgsglqpavclairvntflscsqyHkmyrtvkaitgrqifqplHalRnaekvllpgyhpfewqpplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescdgmgdvsekhgSgpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvrevegleasgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkrmnlkpimrmngnfarklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsigawasnqsgnklfrrfrkmnaRQskcyemedvlkhhwlytskylqkfmnahna
interface signature	NSIMRN/RHHHRSRQ

Estimated binding specificities ?

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# IC=13.018 IC/col=0.566 n_of_columns=23

specificity:

A |   0   4   0   0  24  24  24  24  24  24  24  13  24   1  90  24  24  73   3  15   1   0   0
C |   1   1   0   0  24  24  24  24  24  24  24  13  24   4   4  24  24  13  74   6   1   0   0
G |   3   1  96   0  24  24  24  24  24  24  24  11  24   1   1  24  24   5  11   1  93   0  96
T |  92  90   0  96  24  24  24  24  24  24  24  59  24  90   1  24  24   5   8  74   1  96   0

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updated Tue Sep 10 17:46:23 2024