6oep_AC : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF MOUSE RAG1/2 12RSS-NFC/23RSS-PRC COMPLEX (DNA1)
source	MUS MUSCULUS
experiment	NMR
structural superfamily	Galactose oxidase, central domain;
reference complex	6cg0_D 6oem_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6oep_A interface=43,317,442,443,444,446, rraqkhrlrelkiqvkefadkeeggdvkavcltlfllalrarNehrqadeleaimqgrgsglqpavclairvntflscsqyhkmyrtvkaitgrqifqplhalrnaekvllpgyhpfewqpplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescdgmgdvsekpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvrevegleaSgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkrmnlkpIMRmNgnfarklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsigawasegnqsgnklfrrfrkmnarqskcyemedvlkhhwlytskylqkfmnahna > 6oep_C interface=8,12,88,107,110,217,581,582, hllsltrRaqkHrlrelkiqvkefadkeeggdvkavcltlfllalrarnehrqadeleaimqgrgsglqpavclairvntflscsqyHkmyrtvkaitgrqifqplHalRnaekvllpgyhpfewqpplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescdgmgdvsekhgSgpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvrevegleasgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkrmnlkpimrmngnfarklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsigawasnqsgnklfrrfrkmnaRQskcyemedvlkhhwlytskylqkfmnahna
interface signature	NSIMRN/RHHHRSRQ

Estimated binding specificities ?

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# IC=12.368 IC/col=0.538 n_of_columns=23

specificity:

A |   1   1   0   0  24  24  24  24  24  24  24  10  24   1  78  24  24  73   9  19   4   0   0
C |   4   1   0   0  24  24  24  24  24  24  24   7  24   4  10  24  24   3  69   5   3   0   0
G |   1   1  96   0  24  24  24  24  24  24  24   3  24   1   3  24  24  11   9   7  84   0  96
T |  90  93   0  96  24  24  24  24  24  24  24  76  24  90   5  24  24   9   9  65   5  96   0

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updated Wed Jul 30 22:43:44 2025