6oep_AC : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF MOUSE RAG1/2 12RSS-NFC/23RSS-PRC COMPLEX (DNA1)
source	MUS MUSCULUS
experiment	NMR
structural superfamily	Galactose oxidase, central domain;
reference complex	6cg0_D 6oem_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6oep_A interface=43,317,442,443,444,446, rraqkhrlrelkiqvkefadkeeggdvkavcltlfllalrarNehrqadeleaimqgrgsglqpavclairvntflscsqyhkmyrtvkaitgrqifqplhalrnaekvllpgyhpfewqpplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescdgmgdvsekpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvrevegleaSgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkrmnlkpIMRmNgnfarklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsigawasegnqsgnklfrrfrkmnarqskcyemedvlkhhwlytskylqkfmnahna > 6oep_C interface=8,12,88,107,110,217,581,582, hllsltrRaqkHrlrelkiqvkefadkeeggdvkavcltlfllalrarnehrqadeleaimqgrgsglqpavclairvntflscsqyHkmyrtvkaitgrqifqplHalRnaekvllpgyhpfewqpplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescdgmgdvsekhgSgpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvrevegleasgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkrmnlkpimrmngnfarklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsigawasnqsgnklfrrfrkmnaRQskcyemedvlkhhwlytskylqkfmnahna
interface signature	NSIMRN/RHHHRSRQ

Estimated binding specificities ?

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# IC=12.469 IC/col=0.542 n_of_columns=23

specificity:

A |   0   0   0   0  24  24  24  24  24  24  24   7  24   1  79  24  24  71  10  13   0   0   0
C |   2   1   0   0  24  24  24  24  24  24  24  16  24   1   7  24  24  11  70   9   7   0   0
G |   0   1  96   0  24  24  24  24  24  24  24   9  24   0   7  24  24   9  11   7  82   0  96
T |  94  94   0  96  24  24  24  24  24  24  24  64  24  94   3  24  24   5   5  67   7  96   0

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updated Sat Dec 16 15:08:27 2023