6oeq_AC : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF MOUSE RAG1/2 12RSS-PRC/23RSS-NFC COMPLEX (DNA1)
source	MUS MUSCULUS
experiment	NMR
structural superfamily	Galactose oxidase, central domain;
reference complex	6cg0_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6oeq_A interface=3,7,79,102,105,210,575,576, trRaqkHrlrelkiqvkefadkeeggdvkavcltlfllalrarnehrqadeleaimqgrgsglqpavclairvntflsCsqyhkmyrtvkaitgrqifqplHalRnaekvllpgyhpfewqpplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescdgmgdvsekHgsgpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvrevegleasgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkrmnlkpimrmngnfarklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsigawanqsgnklfrrfrkmnaRQskcyemedvlkhhwlytskylqkfmnahna > 6oeq_C interface=51,448,450,451,452,454,456, rqhllsltrraqkhrlrelkiqvkefadkeeggdvkavcltlfllalrarNehrqadeleaimqgrgsglqpavclairvntflscsqyhkmyrtvkaitgrqifqplhalrnaekvllpgyhpfewqpplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescdgmgdvsekpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvrevegleasgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkrmnlKpIMRmNgNfarklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsigawasegnqsgnklfrrfrkmnarqskcyemedvlkhhwlytskylqkfmnahna
interface signature	RHCHRHRQ/NKIMRNN

Estimated binding specificities ?

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# IC=14.380 IC/col=0.423 n_of_columns=34

specificity:

A |   0  96   0  86  12   9   9  24  24  24  12  96  24  24  24  24  24  24  24  24  24  24  24  24  86  24  24  24  24  24  96   0  96  96
C |  96   0  96   4   3   6   9  24  24  24  60   0  24  24  24  24  24  24  24  24  24  24  24  24   4  24  24  24  24  24   0  96   0   0
G |   0   0   0   3  75   9  65  24  24  24  12   0  24  24  24  24  24  24  24  24  24  24  24  24   3  24  24  24  24  24   0   0   0   0
T |   0   0   0   3   6  72  13  24  24  24  12   0  24  24  24  24  24  24  24  24  24  24  24  24   3  24  24  24  24  24   0   0   0   0

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updated Sat Dec 14 17:16:03 2024