6opm_ABCD : 3D-footprint complex

structure name	CASPOSASE BOUND TO INTEGRATION PRODUCT
reference	Hickman et al. Elife 9 ? 2020
source	METHANOSARCINA MAZEI
experiment	X-ray (resolution=3.10, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6opm_A interface=306,312, mkllllnghginmhvdgaklhikdgrfstteepqeyvfspkrididgiiiygksgnltleairwlikhnvqvsildwngkllttmlppestnlrtkfaqyhafedkearleiakkfieakfykskavldflsqrypeinfdildgltklkdvkstreilgvegtlagkywiefskavpkeydfsnridqfrramgsgdmintmlnygyslleaeclkainsvgldthvgflhemapsknslaydlqepfrfivdlavisliesgameskdfirtenynlrlkptgarkivnefsntlnkkvsyqgKestwsYviflkvrelahyltskkekldftkpeyei > 6opm_B interface=156,190,191,192,194,237, mkllllnghginmhvdgaklhikdgrfstteepqeyvfspkrididgiiiygksgnltleairwlikhnvqvsildwngkllttmlppestnlrtkfaqyhafedkearleiakkfieakfykskavldflsqrypeinfdildgltklkdvkstReilgvegtlagkywiefskavpkeydfsnridqFRRaMgsgdmintmlnygyslleaeclkainsvgldthvgflhemapSknslaydlqepfrfivdlavisliesgameskdfirtenynlrlkptgarkivnefsntlnkkvsyqgkestwsyviflkvrelahyltskkekldftkpeyeieridsydirqkil > 6opm_C interface=306,312, mkllllnghginmhvdgaklhikdgrfstteepqeyvfspkrididgiiiygksgnltleairwlikhnvqvsildwngkllttmlppestnlrtkfaqyhafedkearleiakkfieakfykskavldflsqrypeinfdildgltklkdvkstreilgvegtlagkywiefskavpkeydfsnridqfrramgsgdmintmlnygyslleaeclkainsvgldthvgflhemapsknslaydlqepfrfivdlavisliesgameskdfirtenynlrlkptgarkivnefsntlnkkvsyqgKestwsYviflkvrelahyltskkekldftkpeyeieridsydirqkilsisyv > 6opm_D interface=156,190,191,192,194,237, mkllllnghginmhvdgaklhikdgrfstteepqeyvfspkrididgiiiygksgnltleairwlikhnvqvsildwngkllttmlppestnlrtkfaqyhafedkearleiakkfieakfykskavldflsqrypeinfdildgltklkdvkstReilgvegtlagkywiefskavpkeydfsnridqFRRaMgsgdmintmlnygyslleaeclkainsvgldthvgflhemapSknslaydlqepfrfivdlavisliesgameskdfirtenynlrlkptgarkivnefsntlnkkvsyqgkestwsyviflkvrelahyltskkekldftkpeyei
interface signature	KY/RFRRMS/KY/RFRRMS

Estimated binding specificities ?

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# IC=11.044 IC/col=0.789 n_of_columns=14

specificity:

A |   0   0   0  96  24  24  10  55  24  24   0   0   0   0
C |  96   0  96   0  24  24  21  10  24  24   0   0  96   0
G |   0  96   0   0  24  24  21  21  24  24   0  96   0  96
T |   0   0   0   0  24  24  44  10  24  24  96   0   0   0

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updated Sat Dec 14 17:25:59 2024