6opm_B : 3D-footprint complex

structure name	CASPOSASE BOUND TO INTEGRATION PRODUCT (CRISPR-ASSOCIATED ENDONUCLEASE CAS1)
reference	Hickman et al. Elife 9 ? 2020
source	METHANOSARCINA MAZEI
experiment	X-ray (resolution=3.10, R-factor=0.200)
sequence family	Protein of unknown function DUF48;
multimeric complexes	6opm_ABCD
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6opm_B interface=156,190,191,192,194,237, mkllllnghginmhvdgaklhikdgrfstteepqeyvfspkrididgiiiygksgnltleairwlikhnvqvsildwngkllttmlppestnlrtkfaqyhafedkearleiakkfieakfykskavldflsqrypeinfdildgltklkdvkstReilgvegtlagkywiefskavpkeydfsnridqFRRaMgsgdmintmlnygyslleaeclkainsvgldthvgflhemapSknslaydlqepfrfivdlavisliesgameskdfirtenynlrlkptgarkivnefsntlnkkvsyqgkestwsyviflkvrelahyltskkekldftkpeyeieridsydirqkil
interface signature	RFRRMS

Estimated binding specificities ?

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# IC=3.920 IC/col=0.560 n_of_columns=7

specificity:

A |   0   9   4  96  24  24  19
C |  96   9  81   0  24  24  20
G |   0  67   7   0  24  24  19
T |   0  11   4   0  24  24  38

scan!

Dendrogram of similar interfaces ?

matrix format

  
  HA--------FAKA----WA------RC----------FCRGRG--TC--YT--LT--AT--------SAKCYCEARCLC--------VT----   L                   +---6opm_B    
                                                                                                       +---------------1 
  --DTVT----------STQTFT----------------------PT--STFT------------------------------TTKT--LTDT--       !               +---7cr6_D    
                                                                                                     --3 
  --HC----------DC----KTRTLT--NT--HCRC----------AT--YT--LTLCSTRTNTQTFTNC--SC----------------FTFT   L   !          +--------5xvp_B    
                                                                                                       +----------2 
  --HCVTETET--PG----EG----RT--RTET----ST----------STATST--------------KT--YT------ET----RT------                  +--------6kdv_A

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updated Fri Sep 13 22:52:42 2024