6p0s_ABE : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TERNARY DNA COMPLEX "FX2" CONTAINING E. COLI FIS AND PHAGE LAMBDA XIS
reference	Hancock et al. 'Nucleic 47 8874 2019
source	ESCHERICHIA COLI / ESCHERICHIA PHAGE LAMBDA
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6p0s_A interface=69,70,72,74, sdvltvstqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgTlRkklkkygmn > 6p0s_B interface=59,68,69,71,73, dvltvstqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn > 6p0s_E interface=17,19,20,22,23,26,39, myltlqewnarqrrprSlETvRRwvResrifpppvkdgReylfhesavkvdl
interface signature	NRTR/TNRTR/SETRRRR

Estimated binding specificities ?

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# IC=10.860 IC/col=0.679 n_of_columns=16

specificity:

A |   0   0  11   0   0   0  15  24  24  24   4  91  24  24   0  96
C |   0   9  59  13   0   0   9  24  24  24   9   1  24  24  96   0
G |  96   9  13   9  96   0   4  24  24  24   0   4  24  24   0   0
T |   0  78  13  74   0  96  68  24  24  24  83   0  24  24   0   0

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updated Tue Sep 10 18:10:24 2024