6p0t_ABE : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TERNARY DNA COMPLEX "FX(1-2)-1XIS" CONTAINING E. COLI FIS AND PHAGE LAMBDA XIS
reference	Hancock et al. 'Nucleic 47 8874 2019
source	ESCHERICHIA COLI / ESCHERICHIA PHAGE LAMBDA
experiment	X-ray (resolution=3.60, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6p0t_A interface=71,72,74,76, sdvltvstvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqtraalmmgiNRgTlRkklkkygmn > 6p0t_B interface=60,69,70,74, sdvltvstqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn > 6p0t_E interface=17,19,20,22,23,26,39, myltlqewnarqrrprSlETvRRwvResrifpppvkdgReylfhesavkvdl
interface signature	NRTR/TNRR/SETRRRR

Estimated binding specificities ?

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# IC=15.181 IC/col=0.759 n_of_columns=20

specificity:

A |   0   3   0  24   3   0  24  24  24  24  87   0  87   0  96   0   6  80  24  84
C |   0   3   0  24   3   0  24  24  24  24   3  96   3   5   0  96   3   3  24   3
G |   0  87   0  24   6   0  24  24  24  24   3   0   3  88   0   0   3   7  24   6
T |  96   3  96  24  84  96  24  24  24  24   3   0   3   3   0   0  84   6  24   3

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updated Tue Sep 10 18:10:38 2024