6pij_BCDE : 3D-footprint complex

structure name	TARGET DNA-BOUND V. CHOLERAE TNIQ-CASCADE COMPLEX, CLOSED CONFORMATION
source	VIBRIO CHOLERAE
experiment	NMR
reference complex	6pij_C 6vbw_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6pij_B interface=5,39,68,69,70,101,226,232,335,337, klptNlayersidpsdvcffvvwpddrktpltynsrtlLgqmeakslaydvsgqpiksataealaqgNPHqvdfchvpygashiecsfsvsfsselrqpyKcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFtekqnSrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfQhk > 6pij_C interface=5,68,69,70,101,226,229,232,234,337,339, klptNlayersidpsdvcffvvwpddrktpltynsrtllgqmeakslaydvsgqpiksataealaqgNPHqvdfchvpygashiecsfsvsfsselrqpyKcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFteKatQnSrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfQh > 6pij_D interface=5,70,226,335, klptNlayersidpsdvcffvvwpddrktpltynsrtllgqmeakslaydvsgqpiksataealaqgnpHqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFtekqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfqh > 6pij_E interface=5,101,335,337, klptNlayersidpsdvcffvvwpddrktpltynsrtllgqmeakslaydvsgqpiksataealaqgnphqvdfchvpygashiecsfsvsfsselrqpyKcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfQhk
interface signature	NLNPHKFSMQ/NNPHKFKQSMQ/NHFM/NKMQ

Estimated binding specificities ?

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# IC=18.264 IC/col=0.913 n_of_columns=20

specificity:

A |  96  16  24  96  96   0   0   8  56  96   0   0   0   0  24   0  24  24   0   0
C |   0  16  24   0   0   0  96  72  16   0   0   0  96   0  24  96  24  24   0   0
G |   0  16  24   0   0  96   0   8  16   0  96  96   0  96  24   0  24  24  96   0
T |   0  48  24   0   0   0   0   8   8   0   0   0   0   0  24   0  24  24   0  96

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updated Tue Jan 6 10:30:33 2026