6pij_BCDE : 3D-footprint complex

structure name	TARGET DNA-BOUND V. CHOLERAE TNIQ-CASCADE COMPLEX, CLOSED CONFORMATION
source	VIBRIO CHOLERAE
experiment	NMR
reference complex	6vbw_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6pij_B interface=5,39,68,69,70,101,226,232,335,337, klptNlayersidpsdvcffvvwpddrktpltynsrtlLgqmeakslaydvsgqpiksataealaqgNPHqvdfchvpygashiecsfsvsfsselrqpyKcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFtekqnSrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfQhk > 6pij_C interface=5,68,69,70,101,226,229,232,234,337,339, klptNlayersidpsdvcffvvwpddrktpltynsrtllgqmeakslaydvsgqpiksataealaqgNPHqvdfchvpygashiecsfsvsfsselrqpyKcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFteKatQnSrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfQh > 6pij_D interface=5,70,226,335, klptNlayersidpsdvcffvvwpddrktpltynsrtllgqmeakslaydvsgqpiksataealaqgnpHqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFtekqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfqh > 6pij_E interface=5,101,335,337, klptNlayersidpsdvcffvvwpddrktpltynsrtllgqmeakslaydvsgqpiksataealaqgnphqvdfchvpygashiecsfsvsfsselrqpyKcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfQhk
interface signature	NLNPHKFSMQ/NNPHKFKQSMQ/NHFM/NKMQ

Estimated binding specificities ?

contact

# IC=18.622 IC/col=0.931 n_of_columns=20

specificity:

A |  96  16  24  96  96   0   0   8  56  96   0   0   0   0  24   0  24  24   0   0
C |   0  16  24   0   0   0  96  72  16   0   0   0  96   0  24  96  24  24   0   0
G |   0   0  24   0   0  96   0   8  16   0  96  96   0  96  24   0  24  24  96   0
T |   0  64  24   0   0   0   0   8   8   0   0   0   0   0  24   0  24  24   0  96

scan!

home
updated Sat Dec 14 18:05:47 2024