6qfd_AB : 3D-footprint complex

structure name	THE COMPLEX STRUCTURE OF HSROSR-S4 (VNG0258/ROSR-S4)
reference	Kutnowski et al. 'Nucleic 47 8860 2019
source	Halobacterium salinarum NRC-1
experiment	X-ray (resolution=2.13, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6qil_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qfd_A interface=28,43,44,46,48,49,68, darsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale > 6qfd_B interface=29,44,45,47,49,50,69, pdarsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale
interface signature	LNHRYPR/LNHRYPR

Estimated binding specificities ?

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# IC=10.205 IC/col=0.464 n_of_columns=22

specificity:

A |  89   6  24   0   0   6  24  24  24  24  24  24  24  24  24  24  75   0  96  24   6   0
C |   1  89  24   0   0   6  24  24  24  24  24  24  24  24  24  24   6  96   0  24   9   8
G |   6   1  24   0  96   6  24  24  24  24  24  24  24  24  24  24   9   0   0  24   6   6
T |   0   0  24  96   0  78  24  24  24  24  24  24  24  24  24  24   6   0   0  24  75  82

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updated Sat Dec 14 18:44:52 2024