6qh0_AB : 3D-footprint complex

structure name	THE COMPLEX STRUCTURE OF HSROSR-S5 (VNG0258H/ROSR-S5)
reference	Kutnowski et al. 'Nucleic 47 8860 2019
source	Halobacterium salinarum NRC-1
experiment	X-ray (resolution=2.44, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6qil_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qh0_A interface=28,43,44,46,48,49,68, darsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale > 6qh0_B interface=29,44,45,47,49,50,69, pdarsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale
interface signature	LNHRYPR/LNHRYPR

Estimated binding specificities ?

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# IC=14.514 IC/col=0.605 n_of_columns=24

specificity:

A |   6  96  96  24   0   0   0  13  24  24  24  24  24  24  24  24   8  96   0  96  24   0  69   8
C |   4   0   0  24   0   0   0  57  24  24  24  24  24  24  24  24  13   0  96   0  24   0  13  72
G |  82   0   0  24   0  96   0  13  24  24  24  24  24  24  24  24   8   0   0   0  24  96   6   8
T |   4   0   0  24  96   0  96  13  24  24  24  24  24  24  24  24  67   0   0   0  24   0   8   8

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updated Sat Dec 14 18:45:39 2024