6qh0_CD : 3D-footprint complex

structure name	THE COMPLEX STRUCTURE OF HSROSR-S5 (VNG0258H/ROSR-S5)
reference	Kutnowski et al. 'Nucleic 47 8860 2019
source	Halobacterium salinarum NRC-1
experiment	X-ray (resolution=2.44, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6qil_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qh0_C interface=23,38,39,41,43,44,63, ardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale > 6qh0_D interface=27,42,43,45,47,48,67, arsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale
interface signature	LNHRYPR/LNHRYPR

Estimated binding specificities ?

readout + contact

# IC=14.444 IC/col=0.628 n_of_columns=23

specificity:

A |   8   8   0  24   0   0   0  72  24  24  24  24  24  24  24  12   4  96   0  96  24   0   0
C |   8   8  96  24   0   0   0   8  24  24  24  24  24  24  24  12   4   0  96   0  24   0   4
G |  72   8   0  24   0  96   0   8  24  24  24  24  24  24  24  12  84   0   0   0  24   0   4
T |   8  72   0  24  96   0  96   8  24  24  24  24  24  24  24  60   4   0   0   0  24  96  88

scan!

home
updated Sat Dec 14 18:45:16 2024