6qh0_CD : 3D-footprint complex

structure name	THE COMPLEX STRUCTURE OF HSROSR-S5 (VNG0258H/ROSR-S5)
reference	Kutnowski et al. 'Nucleic 47 8860 2019
source	Halobacterium salinarum NRC-1
experiment	X-ray (resolution=2.44, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6qil_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qh0_C interface=23,38,39,41,43,44,63, ardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale > 6qh0_D interface=27,42,43,45,47,48,67, arsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale
interface signature	LNHRYPR/LNHRYPR

Estimated binding specificities ?

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# IC=14.362 IC/col=0.624 n_of_columns=23

specificity:

A |   7   7   0  24   0   0   0  72  24  24  24  24  24  24  24  11   3  96   0  96  24   0   3
C |   7   7  96  24   0   0   0  10  24  24  24  24  24  24  24  11   6   0  96   0  24   0   6
G |  72  10   0  24   0  96   0   7  24  24  24  24  24  24  24  11  84   0   0   0  24   0   3
T |  10  72   0  24  96   0  96   7  24  24  24  24  24  24  24  63   3   0   0   0  24  96  84

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updated Tue Sep 10 19:07:43 2024