6qil_AB : 3D-footprint complex

structure name	THE COMPLEX STRUCTURE OF HSROSR-S1 (VNG0258H/ROSR-S1)
reference	Kutnowski et al. 'Nucleic 47 8860 2019
source	Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6qil_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qil_A interface=28,43,44,46,48,49,68, darsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale > 6qil_B interface=29,44,45,47,49,50,69, pdarsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale
interface signature	LNHRYPR/LNHRYPR

Estimated binding specificities ?

readout + contact

# IC=13.838 IC/col=0.577 n_of_columns=24

specificity:

A |  81  84   7  24   0   0   0  24  24  24  24  24  24  24  24  24   7  96   0  96  24   0   4   7
C |   4   4  81  24   0   0   5  24  24  24  24  24  24  24  24  24   4   0  96   0  24  96   7  81
G |   4   4   4  24   0  96   0  24  24  24  24  24  24  24  24  24   4   0   0   0  24   0   4   4
T |   7   4   4  24  96   0  91  24  24  24  24  24  24  24  24  24  81   0   0   0  24   0  81   4

scan!

home
updated Tue Jan 6 11:17:09 2026