6qil_AB : 3D-footprint complex

structure name	THE COMPLEX STRUCTURE OF HSROSR-S1 (VNG0258H/ROSR-S1)
reference	Kutnowski et al. 'Nucleic 47 8860 2019
source	Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6qil_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qil_A interface=28,43,44,46,48,49,68, darsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale > 6qil_B interface=29,44,45,47,49,50,69, pdarsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale
interface signature	LNHRYPR/LNHRYPR

Estimated binding specificities ?

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# IC=15.361 IC/col=0.640 n_of_columns=24

specificity:

A |   5  90   0  24   0   0   0  79  79  24  24  24  24  24  24  24  24  96   0  96  24   0   7   5
C |   5   5   0  24   0   0   0   7   5  24  24  24  24  24  24  24  24   0  96   0  24   0   5   5
G |  81   0  96  24   0  96   0   5   5  24  24  24  24  24  24  24  24   0   0   0  24  96   5   7
T |   5   1   0  24  96   0  96   5   7  24  24  24  24  24  24  24  24   0   0   0  24   0  79  79

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updated Sat Dec 14 18:46:32 2024