6qil_CD : 3D-footprint complex

structure name	THE COMPLEX STRUCTURE OF HSROSR-S1 (VNG0258H/ROSR-S1)
reference	Kutnowski et al. 'Nucleic 47 8860 2019
source	Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6qil_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qil_C interface=25,40,41,43,45,46,65, sdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale > 6qil_D interface=27,42,43,45,47,48,67, arsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale
interface signature	LNHRYPR/LNHRYPR

Estimated binding specificities ?

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# IC=9.020 IC/col=0.430 n_of_columns=21

specificity:

A |  81   7  24   0   0   9  24  24  24  24  24  24  24  24  24  24  96   0  96  24   7
C |   1   9  24   0   0   7  24  24  24  24  24  24  24  24  24  24   0  96   0  24  16
G |   7  73  24   0  96   7  24  24  24  24  24  24  24  24  24  24   0   0   0  24  66
T |   7   7  24  96   0  73  24  24  24  24  24  24  24  24  24  24   0   0   0  24   7

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updated Sat Dec 14 18:46:46 2024