6qil_CD : 3D-footprint complex

structure name	THE COMPLEX STRUCTURE OF HSROSR-S1 (VNG0258H/ROSR-S1)
reference	Kutnowski et al. 'Nucleic 47 8860 2019
source	Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6qil_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qil_C interface=25,40,41,43,45,46,65, sdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale > 6qil_D interface=27,42,43,45,47,48,67, arsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale
interface signature	LNHRYPR/LNHRYPR

Estimated binding specificities ?

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# IC=9.855 IC/col=0.469 n_of_columns=21

specificity:

A |   7  24   0   0   0  24  24  24  24  24  24  24  24  11  24  73   0  96  24   5   0
C |  73  24   0   0   0  24  24  24  24  24  24  24  24  11  24  11  96   0  24  81  11
G |  11  24   0  96   0  24  24  24  24  24  24  24  24  12  24   7   0   0  24   5   1
T |   5  24  96   0  96  24  24  24  24  24  24  24  24  62  24   5   0   0  24   5  84

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updated Tue Sep 10 19:08:59 2024