6qtp_ABCD : 3D-footprint complex

structure name	2.37A STRUCTURE OF GEPOTIDACIN WITH S.AUREUS DNA GYRASE AND UNCLEAVED DNA
reference	'Acs 5 570 2019 Escherichia coli
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=2.37, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qtp_A interface=74,75,165, ernitsemresfldyamsvivaralpdvrdglkpvhrrilyglneqgmtpdksykksarivgdvmgkyhphgdSSiyeamvrmaqdfsyryplvdgqgnfgsmdgdgaaamrytearmtkitlellrdinkdtidfidnydgnerepsvlparfpnllangasgIavgmatnipphnltelingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgsiqmrsravierqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtgvrvvidvrkasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqktvvrrrtqynlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsekqaqaildmrlrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrfgddrrteiqlg > 6qtp_B interface=43,45, gkladcsskspeeceiflvegdsaggstksgrdsrtqailplRgKilnvekarldrilnnneirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfmrplieagyvyiaqppykglgemnadqlwettmnpehrallqvkledaieadqtfemlmgdvvenrrqfiednavya > 6qtp_C interface=16,76,79,166, nernitsemresfldYamsvivaralpdvrdglkpvhrrilyglneqgmtpdksykksarivgdvmgkyhphgdsSiyEamvrmaqdfsyryplvdgqgnfgsmdgdgaaamrytearmtkitlellrdinkdtidfidnydgnerepsvlparfpnllangasgIavgmatnipphnltelingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgsiqmrsravieergggrqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtgvrvvidvrkdanasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqktvvrrrtqynlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsekqaqaildmrlrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrfgddrrteiql > 6qtp_D interface=44, kladcsskspeeceiflvegdsaggstksgrdsrtqailplrgKilnvekarldrilnnneirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfmrplieagyvyiaqpptgykglgemnadqlwettmnpehrallqvkledaieadqtfemlmgdvvenrrqfiednavya
interface signature	SSI/RK/YSEI/K

Estimated binding specificities ?

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# IC=6.808 IC/col=0.486 n_of_columns=14

specificity:

A |   0   0   8  52   0  24  24  24  24  24  16  24   0   0
C |  96   0  20  20  84  24  24  24  24  24  24  24  96   0
G |   0  96  20   8   4  24  24  24  24  24   8  24   0  96
T |   0   0  48  16   8  24  24  24  24  24  48  24   0   0

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updated Sat Dec 14 18:50:44 2024