6qua_AB : 3D-footprint complex

structure name	THE COMPLEX STRUCTURE OF HSROSR-SG (VNG0258/ROSR-SG)
reference	Kutnowski et al. 'Nucleic 47 8860 2019
source	Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
experiment	X-ray (resolution=2.68, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6qil_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qua_A interface=25,40,41,45,46,65, sdardltafqkniltvlgeearygLaikreleeyygeevNHgrlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale > 6qua_B interface=29,45,47,49,50,69, pdarsdardltafqkniltvlgeearygLaikreleeyygeevnHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale
interface signature	LNHYPR/LHRYPR

Estimated binding specificities ?

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# IC=10.335 IC/col=0.492 n_of_columns=21

specificity:

A |  73   0  24   0   0   0  73  24  24  24  24  24  24  24  24  24  75   7  96  24   0
C |   9  96  24   0   0   0   9  24  24  24  24  24  24  24  24  24   7  75   0  24   0
G |   7   0  24   0  96   0   7  24  24  24  24  24  24  24  24  24   7   7   0  24   0
T |   7   0  24  96   0  96   7  24  24  24  24  24  24  24  24  24   7   7   0  24  96

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updated Sat Dec 14 18:51:48 2024