6qua_AB : 3D-footprint complex

structure name	THE COMPLEX STRUCTURE OF HSROSR-SG (VNG0258/ROSR-SG)
reference	Kutnowski et al. 'Nucleic 47 8860 2019
source	Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
experiment	X-ray (resolution=2.68, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6qil_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qua_A interface=25,40,41,45,46,65, sdardltafqkniltvlgeearygLaikreleeyygeevNHgrlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale > 6qua_B interface=29,45,47,49,50,69, pdarsdardltafqkniltvlgeearygLaikreleeyygeevnHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale
interface signature	LNHYPR/LHRYPR

Estimated binding specificities ?

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# IC=10.148 IC/col=0.483 n_of_columns=21

specificity:

A |  85  24   0   5   5  24  24  24  24  24  24  24  24  24   5  96   5  96  24   0   5
C |   5  24   0   0   6  24  24  24  24  24  24  24  24  24  10   0  90   0  24   6   6
G |   6  24   0  91   5  24  24  24  24  24  24  24  24  24  17   0   1   0  24  90   5
T |   0  24  96   0  80  24  24  24  24  24  24  24  24  24  64   0   0   0  24   0  80

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updated Tue Sep 10 19:13:41 2024