6qua_CD : 3D-footprint complex

structure name	THE COMPLEX STRUCTURE OF HSROSR-SG (VNG0258/ROSR-SG)
reference	Kutnowski et al. 'Nucleic 47 8860 2019
source	Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
experiment	X-ray (resolution=2.68, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6qil_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qua_C interface=24,39,40,42,44,45,64, dardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaaleh > 6qua_D interface=26,41,42,46,47,66, rsdardltafqkniltvlgeearygLaikreleeyygeevNHgrlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaaleh
interface signature	LNHRYPR/LNHYPR

Estimated binding specificities ?

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# IC=12.135 IC/col=0.528 n_of_columns=23

specificity:

A |  84   0  24   0   0   0  64  24  24  24  24  24  24  24  24  24  96   0  96  24   9  64   4
C |   4  96  24   0   0   0   9  24  24  24  24  24  24  24  24  24   0  96   0  24  13  10   6
G |   4   0  24   0  96   0  10  24  24  24  24  24  24  24  24  24   0   0   0  24   9   9  82
T |   4   0  24  96   0  96  13  24  24  24  24  24  24  24  24  24   0   0   0  24  65  13   4

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updated Thu Jul 31 00:21:42 2025