6qua_CD : 3D-footprint complex

structure name	THE COMPLEX STRUCTURE OF HSROSR-SG (VNG0258/ROSR-SG)
reference	Kutnowski et al. 'Nucleic 47 8860 2019
source	Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
experiment	X-ray (resolution=2.68, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6qil_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qua_C interface=24,39,40,42,44,45,64, dardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaaleh > 6qua_D interface=26,41,42,46,47,66, rsdardltafqkniltvlgeearygLaikreleeyygeevNHgrlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaaleh
interface signature	LNHRYPR/LNHYPR

Estimated binding specificities ?

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# IC=12.063 IC/col=0.524 n_of_columns=23

specificity:

A |   5   8  70  24   0   0   0  24  24  24  24  24  24  24  24  24  12  96   4  96  24   0   5
C |  83   8  12  24   0   0   0  24  24  24  24  24  24  24  24  24  12   0  92   0  24   0   4
G |   4  12   4  24   0  96   0  24  24  24  24  24  24  24  24  24  14   0   0   0  24  96   4
T |   4  68  10  24  96   0  96  24  24  24  24  24  24  24  24  24  58   0   0   0  24   0  83

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updated Tue Sep 10 19:13:55 2024