6qwk_AB : 3D-footprint complex

structure name	THE TRANSCRIPTIONAL REGULATOR PRFA-L140F MUTANT FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH A 30-BP OPERATOR PRFA-BOX MOTIF
reference	Sauer-Eriksson et al. J.Bacteriol. 202 ? 2020
source	Listeria monocytogenes
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex	5lej_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qwk_A interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingkfgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln > 6qwk_B interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingkfgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln
interface signature	HSASR/HSASR

Estimated binding specificities ?

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# IC=7.412 IC/col=0.741 n_of_columns=10

specificity:

A |  78  96   0  78  24  24   6   0   6   6
C |   6   0  96   6  24  24   6   0   6   6
G |   6   0   0   6  24  24   6  96   6   6
T |   6   0   0   6  24  24  78   0  78  78

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updated Tue Sep 10 19:14:57 2024