6qwm_AB : 3D-footprint complex

structure name	THE TRANSCRIPTIONAL REGULATOR PRFA-A218G MUTANT FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH A 30-BP OPERATOR PRFA-BOX MOTIF
reference	Sauer-Eriksson et al. J.Bacteriol. 202 ? 2020
source	Listeria monocytogenes
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex	5lej_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qwm_A interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkrygpkldewfylacpatwgkln > 6qwm_B interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkrygpkldewfylacpatwgkln
interface signature	HSASR/HSASR

Estimated binding specificities ?

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# IC=7.697 IC/col=0.700 n_of_columns=11

specificity:

A |   8  87  87   0  96  24  24  11  24   0   1
C |  17   0   1  96   0  24  24   8  24   0  17
G |  10   9   8   0   0  24  24   8  24   0   0
T |  61   0   0   0   0  24  24  69  24  96  78

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updated Tue Sep 10 19:15:21 2024