6qwm_AB : 3D-footprint complex

structure name	THE TRANSCRIPTIONAL REGULATOR PRFA-A218G MUTANT FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH A 30-BP OPERATOR PRFA-BOX MOTIF
reference	Sauer-Eriksson et al. J.Bacteriol. 202 ? 2020
source	Listeria monocytogenes
experiment	X-ray (resolution=2.90, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qwm_A interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkrygpkldewfylacpatwgkln > 6qwm_B interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkrygpkldewfylacpatwgkln
interface signature	HSASR/HSASR

Estimated binding specificities ?

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# IC=7.925 IC/col=0.720 n_of_columns=11

specificity:

A |   9  87  96  24  67  24  24   0   0   1   0
C |  11   0   0  24   9  24  24   0   0   9   9
G |   9   9   0  24  11  24  24   0  96   0   0
T |  67   0   0  24   9  24  24  96   0  86  87

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updated Sat Dec 14 18:53:46 2024