interface graph thumbnail
legend  pdf

structure nameCRYOEM STRUCTURE OF THE COMPLETE E. COLI DNA GYRASE COMPLEX BOUND TO A 130 BP DNA DUPLEX
sourceESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12)
experimentNMR
structural superfamilyType II DNA topoisomerase;
reference complex6rks_A 6rks_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureIRRKK/REQVI

Estimated binding specificities ?

contactlogo
# IC=5.099 IC/col=0.146 n_of_columns=35 specificity:   
A |   8   8  24  24  24  24  19  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0
C |  80  52  24  24  24  24  43  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0
G |   8  17  24  24  24  24  17  24  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96
T |   0  19  24  24  24  24  17  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0
scan!

home
updated Sat Dec 16 17:19:20 2023