6ryd_EF : 3D-footprint complex

structure name	WUS-HD BOUND TO TGAA DNA
reference	Sloan et al. 'Nat 11 2223 2020
source	Arabidopsis thaliana
experiment	X-ray (resolution=1.57, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	6ryd_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ryd_E interface=5,53,56,57,60,61, qtstRwtptteqikilkelyynnairsptadqiqkitarlrqfgkiegknvfYwfQNhkARerqkkrf > 6ryd_F interface=1,48,49,52,53,56,57, RwtptteqikilkelyynnairsptadqiqkitarlrqfgkiegknvFYwfQNhkARe
interface signature	RYQNAR/RFYQNAR

Estimated binding specificities ?

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# IC=10.463 IC/col=1.046 n_of_columns=10

specificity:

A |   8   0   0   0  78   0   0   0  96  11
C |   8   9   0  96   0   8   0  96   0   8
G |  69   0   0   0   8   0   0   0   0   8
T |  11  87  96   0  10  88  96   0   0  69

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updated Sat Dec 14 19:58:11 2024