6ryd_F : 3D-footprint complex

structure name	WUS-HD BOUND TO TGAA DNA (Protein WUSCHEL)
reference	Sloan et al. 'Nat 11 2223 2020
source	Arabidopsis thaliana
experiment	X-ray (resolution=1.57, R-factor=0.189)
structural superfamily	Homeodomain-like;
sequence family	Homeobox domain;
multimeric complexes	6ryd_EF 6ryi_AB 6ryi_DE 6ryl_ABC 6ryl_DE
redundant complexes	6ryi_D 6ryl_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ryd_F interface=1,48,49,52,53,56,57, RwtptteqikilkelyynnairsptadqiqkitarlrqfgkiegknvFYwfQNhkARe
interface signature	RFYQNAR

Estimated binding specificities ?

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# IC=5.960 IC/col=0.851 n_of_columns=7

specificity:

A |  14  22   1   0   0  96   7
C |  59   9  14   0  96   0   9
G |  23  14   0   0   0   0  14
T |   0  51  81  96   0   0  66

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Dendrogram of similar interfaces ?

matrix format

  
  --------YAQTNAAARG   L            +--------------------6wig_A    
                                    ! 
  --------NCICNARGRG   L   +--------3                    +6fqp_B    
                           !        !   +----------------1 
  --------NCITNARGRG   L   !        +---2                +6fqq_E    
                         --4            ! 
  ------YANC--NAKG--   L   !            +----------------4j19_B    
                           ! 
  NGRGKGSGSAQAVC----   L   +-----------------------------5no6_N

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updated Tue Jun 30 01:09:00 2026