6ryl_ABC : 3D-footprint complex

structure name	WUS-HD BOUND TO TAAT DNA
reference	Sloan et al. 'Nat 11 2223 2020
source	Arabidopsis thaliana
experiment	X-ray (resolution=2.63, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	6ryd_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ryl_A interface=48,51,52,56, wtptteqikilkelyynnairsptadqiqkitarlrqfgkiegknvfYwfQNhkaRerqkk > 6ryl_B interface=2,50,54,57,58,60, tRwtptteqikilkelyynnairsptadqiqkitarlrqfgkiegknvfYwfqNhkAReRqkkr > 6ryl_C interface=2,50,53,54, tRwtptteqikilkelyynnairsptadqiqkitarlrqfgkiegknvfYwfQNhkarerqkkr
interface signature	YQNR/RYNARR/RYQN

Estimated binding specificities ?

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# IC=11.792 IC/col=0.842 n_of_columns=14

specificity:

A |   8  74  96   4  91   8  24   0   0  96  96   0  24  74
C |  74   8   0  78   5  65  24   4   0   0   0  96  24  14
G |  10   4   0  13   0   8  24   4   0   0   0   0  24   4
T |   4  10   0   1   0  15  24  88  96   0   0   0  24   4

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updated Sat Dec 14 19:58:34 2024