6ryl_ABC : 3D-footprint complex

structure name	WUS-HD BOUND TO TAAT DNA
reference	Sloan et al. 'Nat 11 2223 2020
source	Arabidopsis thaliana
experiment	X-ray (resolution=2.63, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	6ryd_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ryl_A interface=48,51,52,56, wtptteqikilkelyynnairsptadqiqkitarlrqfgkiegknvfYwfQNhkaRerqkk > 6ryl_B interface=2,50,54,57,58,60, tRwtptteqikilkelyynnairsptadqiqkitarlrqfgkiegknvfYwfqNhkAReRqkkr > 6ryl_C interface=2,50,53,54, tRwtptteqikilkelyynnairsptadqiqkitarlrqfgkiegknvfYwfQNhkarerqkkr
interface signature	YQNR/RYNARR/RYQN

Estimated binding specificities ?

readout + contact

# IC=11.882 IC/col=0.849 n_of_columns=14

specificity:

A |   8  76  96   8  92  12  24   4   0  96  96   0  24  80
C |  76   8   0  72   4  64  24   0   0   0   0  96  24  12
G |   8   4   0  12   0   8  24   4   0   0   0   0  24   0
T |   4   8   0   4   0  12  24  88  96   0   0   0  24   4

scan!

home
updated Sat Dec 16 17:49:59 2023